BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940076
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06360.1 | Symbols: | Ribosomal protein S8e family protein ... 1363 0.0
> AT5G06360.1 | Symbols: | Ribosomal protein S8e family protein
| chr5:1944768-1946743 FORWARD LENGTH=1081
Length=1081
Score = 1363 bits (738), Expect = 0.0
Identities = 795/823 (97%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 1 CTGATCGCTTAGAAGCAACCATGCCTCAGGGAGATTACATAGATTTGCACATTAAGAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 48 CTGATCGCTTAGAAGCAACCATGCCTCAGGGAGATTACATAGATTTGCACAGGAAGAGGA 107
Query 61 ATGGATATCGCCTCGATCACCACGAGCGCTTGCGCAAGAAGGAGGCGCGTGCAGTTCACA 120
|||||||||||||||| ||| |||| | |||||||||||||||||||| ||||||||
Sbjct 108 ATGGATATCGCCTCGACCACTTCGAGAGAAAGCGCAAGAAGGAGGCGCGTGAAGTTCACA 167
Query 121 AGCGCTCCGCCATGGCTCAGAAGTCTCTAGGTATTAAGGGTAAGATGATTGCTAAGAAAA 180
||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 168 AGCACTCCACCATGGCTCAAAAGTCTCTAGGTATCAAGGGTAAGATGATTGCTAAGAAAA 227
Query 181 ACTATGCTGAGAAAGCTCTCATGAAGAAAACATTGAAAATGCACGAGGAGTCATCATCAA 240
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 228 ACTATGCTGAGAAAGCTCTCATGAAGAAAACATTGAAAATGCATGAAGAGTCATCATCAA 287
Query 241 GGCGTAAGGCTGATGAGAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTCTTGATCGTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GGCGTAAGGCTGATGAGAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTCTTGATCGTG 347
Query 301 AAGACACCACTCGTGCCAAGGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AAGACACCACTCGTGCCAAGGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAG 407
Query 361 CTGGCAAATGGGAAGTCCCT-TTACCAAAGGTCCGTCCAGTTGCTGAAGATGAAATGTTC 419
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 408 CTGGCAAATGGGAGGTCCCTCTT-CCAAAGGTCCGTCCAGTTGCTGAAGATGAAATGTTT 466
Query 420 AGAGTGATCCGATCTGGAAAAAGGAAAACAAAACAATGGAAGAGGATGGTTACAAAAGCT 479
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 467 AGAGTGATCCGATCTGGAAAAAGGAAAACTAAACAATGGAAGCGGATGGTTACAAAAGCT 526
Query 480 ACATTTGTTGGACCTGCTTTCACAAGGAAGCCTCCAAAGTACGAGCGTTTCATTCGTCCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 527 ACATTTGTTGGACCTGCTTTCACAAGGAAGCCTCCAAAGTACGAGCGTTTCATCCGTCCA 586
Query 540 TCTGGTCTGCGTTTCACCAAGGCCCACGTCACTCACCCTGAACTAAAATGCACTTTCTGT 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TCTGGTCTTCGTTTCACCAAGGCCCACGTCACTCACCCTGAACTAAAATGCACTTTCTGT 646
Query 600 CTTGAGATCATCGGAATTAAGAAGAATCCTAACGGTCCCATGTATACATCACTCGGTGTC 659
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CTCGAGATCATCGGGATTAAGAAGAATCCTAACGGTCCCATGTATACATCACTCGGTGTG 706
Query 660 ATGACCAGGGGAACAATCATCGAGGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ATGACCAGGGGAACAATCATCGAGGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCT 766
Query 720 GGAAAGGTTGTCTGGGGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GGAAAGGTTGTCTGGGGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGT 826
Query 780 ATAAATGCTGTCTTACTTGTGTAACCAAATGTCCGGCACTGTC 822
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 827 ATAAATGCTGTTTTACTTGTGTAACCAAATGTCCGGCACTGTC 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5