BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940079 Length=482 Score E Sequences producing significant alignments: (Bits) Value AT5G06380.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 634 0.0 > AT5G06380.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1949315-1950282 FORWARD LENGTH=968 Length=968 Score = 634 bits (343), Expect = 0.0 Identities = 410/439 (93%), Gaps = 17/439 (4%) Strand=Plus/Plus Query 37 AAACAACCGAGTCTCCGTCGAAGTCTATCAACGCCGTCGT-TATGTGGCGGAGGATCTAC 95 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 324 AAACAACCGAGTCTCCGTCGAAGTCTATCAACGCCGTC-TCTATGTGGCGGAGGATCTAC 382 Query 96 GACGGCTGAGTGTTGCGGTGGTACGACGGCGAGTTGTGCCGCCTTATGTCTATGCGCCCC 155 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 383 GACGGCTGAGTGTTGCGGTGGTACGACGGCGAGTTGTGCAGCCTTATGTCTATGCGCTCC 442 Query 156 TTGTAGCGTCGTGAATCTCGTCGTTCTCGCTGTGTACAAGCTCCCTCGTGGACTATGCCG 215 |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 443 TTGTAGCGTCGTGAATCTCGTCGTACTCGCTGTATACAAGCTCCCTCGTGGACTCTGCCG 502 Query 216 CCGCGCAATCCGCCGTATACGACGGAGAA-GATTAGCAAAAAAGGAGTGTT-TAGAGAGT 273 |||||||||||||||||||||||||| || ||||||| |||||||||| || |||||||| Sbjct 503 CCGCGCAATCCGCCGTATACGACGGA-AACGATTAGCGAAAAAGGAGT-TTGTAGAGAGT 560 Query 274 -G--GAGAGCTTGGTAAAGTAGGGAGTTCTCAATTCGCTGTTCACCCATTAGAGAGCCA- 329 | ||||| |||||| || ||||||||||||||||||||||||||| |||||||| || Sbjct 561 GGAAGAGAGTTTGGTAGAGGAGGGAGTTCTCAATTCGCTGTTCACCCGTTAGAGAG-CAG 619 Query 330 AGAT------GACgaagaagaagaagaagaTGAGGCTGTGATTGCGTTAGAGAAGGAGAT 383 |||| || ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 620 AGATGAGGAAGAAGAAGAAGAAGAAGAAGATGAGGCTGTGATTGCGTTGGAGAAGGAGAT 679 Query 384 GTGGAGCAGATTTTACAGTGGTGGTTTCTGGCGAAGCCTTTCTCAAGCTGAAACGGCGTC 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 GTGGAGCAGATTTTACAGTGGTGGTTTCTGGCGAAGCCTTTCTCAAGCTGAAACGGCGTC 739 Query 444 GTCTCCCAAAAACAATTAG 462 ||||||||||||||||||| Sbjct 740 GTCTCCCAAAAACAATTAG 758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22957005179 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5