BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940079

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06380.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   634    0.0  


> AT5G06380.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G11690.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:1949315-1950282 FORWARD LENGTH=968
Length=968

 Score =  634 bits (343),  Expect = 0.0
 Identities = 410/439 (93%), Gaps = 17/439 (4%)
 Strand=Plus/Plus

Query  37   AAACAACCGAGTCTCCGTCGAAGTCTATCAACGCCGTCGT-TATGTGGCGGAGGATCTAC  95
            |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  324  AAACAACCGAGTCTCCGTCGAAGTCTATCAACGCCGTC-TCTATGTGGCGGAGGATCTAC  382

Query  96   GACGGCTGAGTGTTGCGGTGGTACGACGGCGAGTTGTGCCGCCTTATGTCTATGCGCCCC  155
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  383  GACGGCTGAGTGTTGCGGTGGTACGACGGCGAGTTGTGCAGCCTTATGTCTATGCGCTCC  442

Query  156  TTGTAGCGTCGTGAATCTCGTCGTTCTCGCTGTGTACAAGCTCCCTCGTGGACTATGCCG  215
            |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct  443  TTGTAGCGTCGTGAATCTCGTCGTACTCGCTGTATACAAGCTCCCTCGTGGACTCTGCCG  502

Query  216  CCGCGCAATCCGCCGTATACGACGGAGAA-GATTAGCAAAAAAGGAGTGTT-TAGAGAGT  273
            |||||||||||||||||||||||||| || ||||||| |||||||||| || ||||||||
Sbjct  503  CCGCGCAATCCGCCGTATACGACGGA-AACGATTAGCGAAAAAGGAGT-TTGTAGAGAGT  560

Query  274  -G--GAGAGCTTGGTAAAGTAGGGAGTTCTCAATTCGCTGTTCACCCATTAGAGAGCCA-  329
             |  ||||| |||||| || ||||||||||||||||||||||||||| |||||||| || 
Sbjct  561  GGAAGAGAGTTTGGTAGAGGAGGGAGTTCTCAATTCGCTGTTCACCCGTTAGAGAG-CAG  619

Query  330  AGAT------GACgaagaagaagaagaagaTGAGGCTGTGATTGCGTTAGAGAAGGAGAT  383
            ||||      || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  620  AGATGAGGAAGAAGAAGAAGAAGAAGAAGATGAGGCTGTGATTGCGTTGGAGAAGGAGAT  679

Query  384  GTGGAGCAGATTTTACAGTGGTGGTTTCTGGCGAAGCCTTTCTCAAGCTGAAACGGCGTC  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  680  GTGGAGCAGATTTTACAGTGGTGGTTTCTGGCGAAGCCTTTCTCAAGCTGAAACGGCGTC  739

Query  444  GTCTCCCAAAAACAATTAG  462
            |||||||||||||||||||
Sbjct  740  GTCTCCCAAAAACAATTAG  758



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22957005179


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5