BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940081
Length=3134
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 4831 0.0
> AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:1955959-1959051 FORWARD LENGTH=3093
Length=3093
Score = 4831 bits (2616), Expect = 0.0
Identities = 2937/3094 (95%), Gaps = 14/3094 (0%)
Strand=Plus/Plus
Query 25 ATGAAAGCCTTGTTTCGATTCAAGTCTTGCTTGTTTGATCCAACACGAAGAAGGAACCCA 84
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1 ATGAAAGCCTTGTTTCGATTCAAGTCTTGCTTGTTTGATCCAACACGAAGGAGGAACCAA 60
Query 85 CTCGTTTCTTTCTCAGGTTTCTCAAAGTCATCTAAATCTAATAAAACCCGTGAGAC--C- 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CTCGTTTCTTTCTCAGGTTTCTCAAAGTCATCTAAATCTAATAAAACCCGTGAGACTACT 120
Query 142 ACCCCATCGAAGATCC-AGTCAGAAGCTACTGCAATCACCTCACTTTTCAACGAGATTAC 200
||| |||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 121 ACCACATCGAAGATCCAAG-CAGAAGCTACTGCAATCACTTCACTATTCAACGAGATTAC 179
Query 201 TGATATTTTAGGATCGGATGTTGTCCAAAC-AGATGAGACTACGCGGCTCAGAGCCCATG 259
||| ||||||||| |||||||||| ||||| ||||||||| |||||||||||| ||||||
Sbjct 180 TGAGATTTTAGGAACGGATGTTGT-CAAACTAGATGAGACCACGCGGCTCAGATCCCATG 238
Query 260 TGTCAGCACCTGTGTGTGATAATGGAGCATTGGTTTCTTGCACGCAAGGTGTTCGTGAAA 319
|||||| | |||| | ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct 239 TGTCAGGAGCTGTCTCTGATAATGGAGTATCGGTTTCTTGCACGGAAGGTGTTCGTCAAA 298
Query 320 ATGCTGCAATGGGATTTTCAGGTGAGAATGAAGAGGCTCAGAAAGGTCTTCTTGAAGAAG 379
|||||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||
Sbjct 299 ATGCTGCAATGGGATTTTCAGGTGAGGATGAAAAGGCTCAGAAAGTTCTTCATGAAGAAG 358
Query 380 TTGACTTCAGCCCCGTGGTTCATCAGATTACGAGTGTCGTTAGGGCAGATGATGAAATAG 439
||||||||||||||||||||||| |||||||||||||||| |||| |||||||| | |||
Sbjct 359 TTGACTTCAGCCCCGTGGTTCATGAGATTACGAGTGTCGTCAGGGGAGATGATGTATTAG 418
Query 440 TTTCCATGGAGGACAGGTTAGAGATATTGAGTTTTCGGTTTGAACCCGAAATAGTGGAGA 499
|||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 419 TTTCGATGGAGGACAGGTTAGAGAAACTGAGTTTTCGGTTTGAACCAGAAATAGTGGAGA 478
Query 500 ATGTACTGAAGAGGTGCTTCAAGGTTCCTCATTTGGCTATGAGGTTCTTTAATTGGGTGA 559
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 ATGTACTCAAGAGGTGCTTCAAGGTTCCTCATTTGGCTATGAGGTTCTTTAATTGGGTTA 538
Query 560 AACACAAGGATGGTTTTTCGCATAGAGTCGGAATTTACAACACCGTGCTTAGCATGGCTG 619
|||| |||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||
Sbjct 539 AACAAAAGGATGGGTTTTCGCATAGAGTTGGAATTTACAATACCATGCTTAGCATAGCTG 598
Query 620 GGGAAGCGAGAAATCTCGATATGGTAGACGAATTGGTGAAAGAAATGGAGAAGCACGCTT 679
| |||||||||||||||||||||||||| |||||||||| |||||||||||| | | ||
Sbjct 599 GAGAAGCGAGAAATCTCGATATGGTAGATGAATTGGTGAGTGAAATGGAGAAGAATGGTT 658
Query 680 GTGATAAGGATATCAGGACGTGGACTATTCTTATCCCAGTGTACGGGAAAGCAAAAAAGA 739
||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 659 GTGATAAGGATATCAGGACATGGACCATTCTTATCTCAGTGTACGGGAAGGCAAAAAAGA 718
Query 740 TTGGAAAAGGTCTGCTCGTTTTTGAGAAGATGAGGAAAAGTGGCTTCGAACTTGATGCTG 799
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 719 TTGGAAAAGGTCTGCTAGTTTTTGAGAAGATGAGGAAAAGTGGATTCGAACTCGATGCTA 778
Query 800 CGGCTTACAATATCATGATTAGGTCCCTATGCATCGCTGGTAGAGGTGATCTTGCGCTTG 859
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 779 CGGCTTACAATATCATGATTAGGTCTCTATGTATTGCTGGTAGAGGTGATCTTGCGCTTG 838
Query 860 AATTCTATAAAGAAATGATGGAAAAGGGTATCACTTTTGGATTGAGAACGTACAAGATGT 919
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 839 AATTCTATAAGGAAATGATGGAAAAAGGTATCACTTTTGGATTAAGAACGTACAAGATGT 898
Query 920 TACTAGATTGCATAGCGAAATCAGAGAAAGTTGATGTAGTCCAGTCCATTGCAGATGACA 979
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TACTGGATTGCATAGCGAAATCAGAGAAAGTTGATGTAGTCCAGTCCATTGCAGATGACA 958
Query 980 TGGTTAGGATATGTGAGATATCAGAACATGATGCTTTTGGTTATTTGCTCAAGAGTTTTT 1039
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 TGGTTAGGATATGTGAGATATCAGAACATGACGCTTTTGGTTATTTGCTCAAGAGTTTTT 1018
Query 1040 GTGTTTCCGGTAAGATAAAAGAAGCTCTAGAACTGATCCGCGAGCTAAAAAACAAGGAAA 1099
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 1019 GTGTTTCCGGTAAGATAAAAGAAGCTCTGGAACTGATCCGCGAGCTTAAGAACAAGGAAA 1078
Query 1100 TGTGCCTCGACGCCAAGTATTTTGAGATTTTGGTTAAAGGACTTTGTAGAGCTAATAGAA 1159
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1079 TGTGCCTCGACGCTAAGTATTTTGAGATTTTGGTAAAAGGACTTTGTAGAGCCAATAGAA 1138
Query 1160 TGGTAGATGCTCTAGAGATTGTTGATATAATGAAGAGAAGGAAACTGGATGACTCAAATG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 TGGTAGATGCTCTAGAGATTGTTGATATAATGAAGAGAAGGAAACTGGATGACTCTAATG 1198
Query 1220 TCTATGGGATCATCATCAATGGGTATCTCAGGCAAAACGATGTTTCAAAAGCACTTGAAC 1279
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCTATGGTATCATCATCAGTGGGTATCTCAGGCAAAACGATGTTTCAAAAGCACTTGAAC 1258
Query 1280 AGTTTGAAATTATTAAAAAATCAGGGCGTCCACCTAGAGTTTCTACATACACTGAGATTA 1339
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGTTTGAGGTTATTAAAAAATCAGGGCGTCCACCTAGAGTTTCTACATACACTGAGATTA 1318
Query 1340 TGCAACACCTCTTCAAGTTGAAACAGTTTGAAAATGGTTGCAACTTATTCAGTGAGATGA 1399
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1319 TGCAACACCTCTTCAAGTTGAAACAGTTTGAAAAGGGTTGCAACTTATTCAATGAGATGA 1378
Query 1400 TAGAGAGCGGGATTGAGCCTGACAGCGTTGCTATCACAGCCGTGGTTGCTGGTCATTTGG 1459
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TAGAGAACGGGATTGAGCCTGACAGCGTTGCTATCACAGCCGTGGTTGCTGGTCATTTGG 1438
Query 1460 GCCAAAACCGAGTAGCAGAGGCATGGGAGGTGTTTGGCAGCATGGAGGAAAAGGGCATCA 1519
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 1439 GCCAAAACCGAGTAGCAGAGGCATGGAAGGTGTTTAGCAGCATGGAGGAAAAAGGCATCA 1498
Query 1520 AACCTACATGGAAATCGTATTCGATATTTATGAAAGAGCTCTGTAGATCATCAAGATATG 1579
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1499 AACCTACATGGAAATCGTATTCGATATTTGTGAAAGAGCTCTGTAGATCATCAAGATATG 1558
Query 1580 ATGAGATCATTACGCTATTCAATCAAATGCACGCCTCCAAGATAGCTATCAGAGATGATA 1639
|||||||||||| | |||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1559 ATGAGATCATTAAGATATTTAATCAAATGCACGCCTCCAAGATAGTTATTAGAGATGATA 1618
Query 1640 TTTTTTCTTGGGTTATCTCTAGTATGGaaaaaaaTGGTGAAAAGGAGAAGATTGATCTTA 1699
| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1619 TCTTTTCTTGGGTTATCTCTAGTATGGAGAAAAATGGTGAAAAGGAGAAGATTCATCTTA 1678
Query 1700 TCAAAGAAATCCAGAAACA-ATGCAATGCCTATAATCAAGAACTAAACGGATCTGGCAAA 1758
||||||||||||||||| | || |||| ||||| | | |||||||||||||||||||||
Sbjct 1679 TCAAAGAAATCCAGAAA-AGATCCAATTCCTATTGTGATGAACTAAACGGATCTGGCAAA 1737
Query 1759 GCAGAATTTATG-C-A-AA-AAGAGCTCGTTAATAAGTATAATCGTCCACAGGTAGTGCA 1814
|||||||||| | | | || ||||||| ||| || | |||||| ||||||| |||||||
Sbjct 1738 GCAGAATTTA-GTCAAGAAGAAGAGCTTGTTGATGACTATAATTGTCCACAACTAGTGCA 1796
Query 1815 GCAGTCAGCTCTTCCACCAGCTTCATCTGCTGTTGATAAAATGGATGTGCAAGAAATTTG 1874
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1797 GCAGTCAGCTCTTCCACCAGCTTTATCTGCTGTTGATAAAATGGATGTGCAAGAAATTTG 1856
Query 1875 TCATGTGTTATCATCCTCCCGAGATTGGGAGAGAACACAAGAAGCTCTAGAAAAATTGAC 1934
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1857 TCGGGTGTTATCATCCTCCCGAGATTGGGAGAGAACACAAGAAGCTCTAGAAAAATCGAC 1916
Query 1935 AGTCCAGTTCACACCAGAACTGGTAGTTGAGGTTCTACGTAATGCCAAGATACAAGGCAA 1994
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1917 AGTCCAGTTCACACCAGAACTGGTAGTTGAGGTTCTACGTCATGCCAAGATACAAGGCAA 1976
Query 1995 CGCTGTTTTACGTTTCTTTTCATGGGTGGGAAAGAGAAATGGCTATAAGCACAATTCAGA 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 CGCTGTTTTACGTTTCTTTTCATGGGTGGGAAAGAGAAATGGCTATAAGCACAATTCAGA 2036
Query 2055 GGCATACAACATGAGCATCAAAGTTGCAGGATGTGGGAAAGATTTTAAGCAGATGAGAAG 2114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GGCATACAACATGAGCATCAAAGTTGCAGGATGTGGGAAAGATTTTAAGCAGATGAGAAG 2096
Query 2115 TCTGTTTTACGAGATGAGAAGACAAGGCTGCTTGATAACACAAGATACTTGGGCAATCAT 2174
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TCTGTTTTACGAGATGAGAAGGCAAGGCTGCTTGATAACACAAGATACTTGGGCAATCAT 2156
Query 2175 GATAATGCAGTATGGTAGAACCGGTCTTACCAACATTGCTATTAGAACGTTCAAGCAAAT 2234
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2157 GATAATGCAGTATGGTAGAACCGGTCTTACCAACATTGCTATTAGAACGTTCAAGGAAAT 2216
Query 2235 GAAAGATATGGGTCTGATCCCGAGCTCTTCGACCTTCAAGTGTTTAATCACAGTTCTTTG 2294
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2217 GAAAGATATGGGTCTGATCCCGAGCTCTTCGACTTTCAAGTGTTTAATCACAGTTCTTTG 2276
Query 2295 TGAGAAGAAAGGCAGGAACGTTGAAGAAGCCACCAAAACATTCCGCGAGATGATTCGTTC 2354
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2277 TGAGAAGAAAGGCAGAAACGTTGAAGAAGCCACCAGAACATTCCGGGAGATGATTCGTTC 2336
Query 2355 GGGTTTTGTCCCAGATAGAGAACTAGTCCAAGACTACTTGGGATGCTTATGTGAAGTTGG 2414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337 AGGTTTTGTCCCAGATAGAGAACTAGTCCAAGACTACTTGGGATGCTTATGTGAAGTTGG 2396
Query 2415 TAACACAAAGGATGCAAAAAGTTGTTTGGATTCTCTCGGCAAGATAGGTTTCCCTGTCCC 2474
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2397 TAACACGAAGGATGCAAAAAGTTGTTTGGATTCTCTCGGCAAGATAGGTTTCCCTGTCAC 2456
Query 2475 TGTGGCCTACTCAATTTACATAAGAGCTCTTTCTCGAATTGGAAAGCTAGAAGAAGCTCT 2534
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2457 TGTGGCCTACTCAATTTACATAAGAGCTCTTTGTCGAATTGGAAAGCTAGAAGAAGCTCT 2516
Query 2535 ATCAGAATTAGCCAGTTTTGAAGGAGATAGATCTTTACTCGATCAGTATACTTATGGAAG 2594
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 2517 ATCAGAATTAGCCAGTTTTGAAGGAGAGAGATCTTTACTAGACCAGTATACTTATGGAAG 2576
Query 2595 CATTGTTCATGGTTTATTGCAGAGAGGAGACTTACACAAAGCACTGGATAAAGTGAATTC 2654
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2577 CATTGTTCATGGTTTATTACAGAGAGGAGACTTACAAAAAGCACTGGATAAAGTGAACTC 2636
Query 2655 CATGAAGGAAATCGGAATAAAACCCGGTGTCCATGTCTACACATCTCTGATTGTTCATTT 2714
|||||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2637 CATGAAGGAAATTGGAACAAAACCTGGTGTCCATGTCTACACATCTCTGATTGTTTATTT 2696
Query 2715 CTTCAAGGAGAAACAGTTCGAGAAGGTTCTAGAGACATGTCATAAAATGAAAGAAGAAAG 2774
|||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 2697 CTTCAAGGAGAAACAGCTCGAGAAGGTTCTAGAGACATGTCAGAAAATGGAAGGAGAAAG 2756
Query 2775 CTGCGAACCTTCGGTTGTTACATATACGGCAATGATATGCGGATACATGAGCCTGGGAAA 2834
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2757 CTGCGAACCTTCGGTTGTTACATATACGGCAATGATATGTGGATACATGAGCCTAGGAAA 2816
Query 2835 AGTGGAAGAGGCTTGGAAAGCATTCCGCAATATGGAAGAGAAAGGAACTTCACCAGATTT 2894
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 2817 AGTGGAAGAGGCTTGGAATGCATTCCGCAATATGGAAGAGAGAGGAACTTCACCAGATTT 2876
Query 2895 TAAAACATATAGTAAGTTCATAAACTGTTTGTGCCAAGCAGGCAAATCTGAAGATGCCCT 2954
||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 2877 TAAAACATATAGTAAGTTCATAAACTGCTTGTGCCAAGCATGCAAATCAGAAGATGCCCT 2936
Query 2955 GAAGCTTCTGTCTGAGATGCTGGATAAGGGTATTGCTCCAAGCACTATCAATTTCCGGAC 3014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2937 GAAGCTTCTGTCTGAGATGCTGGATAAGGGTATTGCTCCAAGCACTATCAATTTCCGAAC 2996
Query 3015 AGTTTTCTACGGGTTAAACAGAGAAGGCAAGCAGGATCTTGCCCGGATTGTTCTACAGAA 3074
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 2997 AGTTTTCTACGGGTTAAACAGAGAAGGCAAGCATGATCTTGCCCGGATTGCTCTACAGAA 3056
Query 3075 GAAGTCTGCTTTGGTAGCACAGCGAAAGGTATCT 3108
||| || ||||| ||||||||||||| |||||||
Sbjct 3057 GAAATCGGCTTTAGTAGCACAGCGAACGGTATCT 3090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 155868691901
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5