BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940090

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06490.1 | Symbols:  | RING/U-box superfamily protein | chr5...   959    0.0  


> AT5G06490.1 | Symbols:  | RING/U-box superfamily protein | chr5:1977996-1978589 
REVERSE LENGTH=594
Length=594

 Score =  959 bits (519),  Expect = 0.0
 Identities = 569/594 (96%), Gaps = 0/594 (0%)
 Strand=Plus/Plus

Query  22   ATGAATGCGACGGTGGTGCCACCTTACTCCGGCCACTGGCTAACGAACACAGATAGGATG  81
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAATGCGACGGTGGTGCCACCTTACTCCGGCCACTGGCTAACGAACACAGATAGGATG  60

Query  82   GGTGGATTGGCTTACGGGATCGGAGTCTCCATTGGTATACTTATGCTAATTACCACAATC  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTGGATTGGCTTACGGGATCGGAGTCTCCATTGGTATACTTATGCTAATTACCACAATC  120

Query  142  ACCCTCACTTCTTATTATTGCACTCGAAGCCATATCTCTGCCTCTCCCACGACCACTCCA  201
            ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  ACCCTAACTTCTTACTATTGCACTCGAAGCCATATCTCTGCCTCTCCCACGACCACTCCT  180

Query  202  AGGACAAGACGCCGGCGAAGAGAGACCAATGGAACGTTACAACCTGGCCAAGATCAGTTC  261
            |||||||||||||||| |||||||| |||||||||||||| |||||||||||| | ||||
Sbjct  181  AGGACAAGACGCCGGCAAAGAGAGAGCAATGGAACGTTACCACCTGGCCAAGAACGGTTC  240

Query  262  GACTTCGACGGTGATGAAAACGACACCGTTGTGGTCGAAGTCATGGGGCTAAACGAGGAG  321
            |||||||| | |||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct  241  GACTTCGAAGATGATGAAAGCGACACCGTTGTGGTCGAAGTCTTGGGGCTAACCGAGGAG  300

Query  322  GTGATCAAGAGTTTTCCTAAGCTTCCGTACGATGAGGCTCGTGTGAGTTATAGCTTGCAA  381
            ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct  301  GTGATCAAGGGTTTTCCTAAGCTCCCGTACGAAGAGGCTCGTGTGAGTTATAGCTTACAA  360

Query  382  AAGGAATCCAGTACGACGTCGTGTTGTTCTATATGTCTCGCGGATTACaaaaaaaTGGAT  441
            |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| 
Sbjct  361  AAGGAATCGAGTACGACGTCGTGTTGTTCTATATGTCTTGCGGATTACAAGAAAATGGAC  420

Query  442  ATGATCAGGGTTTTGCCTGATTGTAACCACTTGTTCCACGACACTTGCGTTGACCCTTGG  501
            ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  421  ATGATCAGGGTTTTGCCCGATTGTAACCACTTGTTCCACGACAATTGCGTTGACCCTTGG  480

Query  502  CTGAGGCTTCATCCTACGTGTCCCGTTTGCCGTACGTCTCCGTTACCATCACCGGCGATG  561
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  CTCAGGCTTCATCCTACTTGTCCCGTTTGCCGTACGTCTCCGTTACCATCACCGGCGATG  540

Query  562  ACACCTGTCGCTGACGTTGTTCCCTTTTCCCGCCGGCCAATGATGGATATTTGA  615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  ACACCTGTCGCTGACGTTGTTCCCTTTTCCCGCCGGCCAATGATGGATATTTGA  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30642829670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5