BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940092
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06510.1 | Symbols: NF-YA10 | nuclear factor Y, subunit A10 ... 1341 0.0
AT3G05690.1 | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear f... 348 6e-95
> AT5G06510.1 | Symbols: NF-YA10 | nuclear factor Y, subunit A10
| chr5:1984991-1987044 FORWARD LENGTH=1362
Length=1362
Score = 1341 bits (726), Expect = 0.0
Identities = 813/855 (95%), Gaps = 5/855 (1%)
Strand=Plus/Plus
Query 1 TTGGACTTTTGG-ACATAAGCTATGCAAACTGAGGAACTTTTGTCGCCACCACAGACTCC 59
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 78 TTGGACTTTTGGAACATAAGCTATGCAAACTGAGGAGCTTTTGTCGCCACCACAGACTCC 137
Query 60 TTGGTGGAATGCTTTTGGATCTCAGCAGTTGACTACAGAGAGCCTTTCCGGCGACGCTTC 119
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 138 TTGGTGGAATGCTTTTGGATCTCAGCCGTTGACTACAGAGAGCCTTTCCGGCGAAGCTTC 197
Query 120 TGATTCATTCACCGGAGTTAAGGCAGTTACTCCTGAGACAGAACAAGGTGTGGTGGATAA 179
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 198 TGATTCATTCACCGGAGTTAAGGCAGTTACTACGGAGGCAGAACAAGGTGTGGTGGATAA 257
Query 180 ACAAAGTTCTACAACTCTCTTGACTTTCTCACCTGGTGGTGGAAAGAGTTCAAGAGATGT 239
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 258 ACAAACTTCTACAACTCTCTTCACTTTCTCACCTGGTGGTGAAAAGAGTTCAAGAGATGT 317
Query 240 GCCAAAGCCTCATGTTGCTTTCACGATGCAATCAGCTTGCTTCGAGTTTGGATTTGCTCA 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 318 GCCAAAGCCTCATGTTGCTTTCGCGATGCAATCAGCTTGCTTCGAGTTTGGATTTGCTCA 377
Query 300 GCCAATGATCTACACAAAGCATCCTCATGTAGAACAATACTATGGAGTTGTTTCAGCCTA 359
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 378 GCCAATGATGTACACAAAGCATCCTCATGTTGAACAATACTATGGAGTTGTTTCAGCATA 437
Query 360 TGGATCTCAGAGGTCTTCGGGACGATTAATGCTGCCTCTAAAGATGGAGACAGAAGAAGA 419
|||||||||||||||||||| ||| ||||| | || || ||||||||||||||||||||
Sbjct 438 CGGATCTCAGAGGTCTTCGGGCCGAGTAATGATTCCACTGAAGATGGAGACAGAAGAAGA 497
Query 420 TGGTACCATCTATGTGAACTCGAAGCAGTACCATGGAATTATCAGGCGACGCCAGTCCCG 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 498 TGGTACCATCTATGTGAACTCAAAGCAGTACCATGGAATTATCAGGCGACGCCAGTCCCG 557
Query 480 AGCAAAGGCTGAAAAACTGAGTAGATGCCGTAAGCCATATATGCATCACTCGCGCCATCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 558 AGCAAAGGCTGAAAAACTGAGTAGATGCCGTAAGCCATATATGCATCACTCACGCCATCT 617
Query 540 CCATGCTATGCGCCGTCCTAGAGGATCTGGTGGGCGTTTCTTGAACACCAAGGCAGCTGA 599
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 618 CCATGCTATGCGCCGTCCTAGAGGATCTGGCGGGCGTTTCTTGAACACCAAGACAGCTGA 677
Query 600 TGCGGCTAAGCAATCTAAGCCGAGCAATTCTCAGAGTTCTGAAGTCTTTCATCCGGAAAA 659
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 678 TGCGGCTAAGCAGTCTAAGCCGAGTAATTCTCAGAGTTCTGAAGTCTTTCATCCGGAAAA 737
Query 660 C-AGGACCATAAACTCATCGAGGGAAGCAAACGGGTCAAATCTCTCGGATTCTACAGTTA 718
|| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct 738 TGAG-ACCATAAACTCATCGAGGGAAGCAAATGAGTCAAATCTCTCGGATTCTGCAGTTA 796
Query 719 CAAATATGGATTACTTTCTAAGTTCATCGGTCT-ATTCTTCTGGTGGCATGGTCATGCCT 777
||| ||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||
Sbjct 797 CAAGTATGGATTACTTTCTAAGTTCGTCGG-CTTATTCTCCTGGTGGCATGGTCATGCCT 855
Query 778 ATCAAGTGGAATGCAGCAGCAATGGATATTAGCTGCTGCAATCTTAATACATGATGAGCA 837
|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||
Sbjct 856 ATCAAGTGGAATGCAGCAGCAATGGATATTGGCTGCTGCAAACTTAATATATGATCAGCA 915
Query 838 GATAGGGGACAAGAC 852
|||||||||||||||
Sbjct 916 GATAGGGGACAAGAC 930
> AT3G05690.1 | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear
factor Y, subunit A2 | chr3:1676546-1678932 REVERSE LENGTH=1464
Length=1464
Score = 348 bits (188), Expect = 6e-95
Identities = 495/631 (78%), Gaps = 69/631 (11%)
Strand=Plus/Plus
Query 1 TTGGACTTTTGGACATAAGCTATGCAAAC--TGAG-GAA---CTTTTGTC-GCCACCACA 53
||||| |||||| || ||||||||||| |||| ||| || || || | | |||||
Sbjct 188 TTGGA-ATTTGGAGAT-GGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG-CTCCACA 244
Query 54 GACTCCTTGGTGGAATGCTTTTGGATCTCAGCAGTTGACTACAGAGAGCCTTTCCGGCGA 113
|||| ||||||||| ||||||||||||||||| |||| || | ||||| || |||||||
Sbjct 245 GACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCGCCGGCGA 304
Query 114 CGCTTCTGATTCATTCACCGGAGTTAAGG-CAG-T-TACTC-CTGAGACAGAACAAGGTG 169
|||||| |||||| |||||||||||| | | | | || ||||||| |||| |
Sbjct 305 ---TTCTGACTCATTCGCCGGAGTTAAGGTCGGATCT-GTCGGAGAGACAGGACAA--CG 358
Query 170 TGGTGGATAAACA-A--AGTTCTACAACTCTCTTGA-CTTTCTCACCTGGTGGTGGAAAG 225
| ||||||||||| | | ||| |||| | ||| | ||||||||| ||||| || ||||
Sbjct 359 T-GTGGATAAACAGAGCAACTCTGCAACGCACTT-AGCTTTCTCACTTGGTGATGTAAAG 416
Query 226 AGTTCAAGAGATGTGCCAAAGCCTCAT---GTTGCTTTCACGATGCAATCAGCTTGCTTC 282
||| ||||| |||||||||||||||| | | ||||| | ||||||||| |||||||
Sbjct 417 AGTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTG 476
Query 283 GAGTTTGGATTTGCTCAGCCAATGATCTACACAAAGCAT-CCTCATGTAG---AACAATA 338
|| |||||||| |||||||| |||||| |||||| || ||| ||| || |||||||
Sbjct 477 GAACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCT-ATGGAGAACAACAATA 535
Query 339 CTATGGAGTTGTTTCAGCCTATGGATCTCAGAGGTCTTCGGGACGATTAATGCTGCCTCT 398
||||||||||||||||||||||||||||||||| | ||| | |||||| |||||
Sbjct 536 CTATGGAGTTGTTTCAGCCTATGGATCTCAGAG--CA--GGG----T-AATGCTTCCTCT 586
Query 399 AAAGATGGAGACAGAAGAAGATGGTACCATCTATGTGAACTCGAAGCAGTACCATGGAAT 458
||| ||||| || | |||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 587 AAACATGGAAAC-G--GAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAAT 643
Query 459 TATCAGGCGACGCCAGTCCCGAGCAAAGGCTG------------A--A-AA-AC-T-GAG 500
|| ||| ||||||| ||||| |||||||||| | | || | | |||
Sbjct 644 CATAAGGAGACGCCAATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAG 703
Query 501 TAG-A--TGCCGTAAGCCATATATGCATCACTCGCGCCATCTCCATGCTAT-GCGCCGTC 556
||| | ||||| ||||||||||||||||| ||||||||||||||||| || ||| ||||
Sbjct 704 TAGTAGATGCCGCAAGCCATATATGCATCATTCGCGCCATCTCCATGC-ATTGCGGCGTC 762
Query 557 CTAGAGGATCTGGTGGGCGTTTCTTGAACAC 587
|||||||||| |||||| | |||||||||||
Sbjct 763 CTAGAGGATCCGGTGGGAGATTCTTGAACAC 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5