BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940094
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 204 1e-51
> AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein |
chr1:5027662-5030792 FORWARD LENGTH=2789
Length=2789
Score = 204 bits (110), Expect = 1e-51
Identities = 166/193 (86%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 610 ATGATGGGCAACTCGTTGAGATCATAGTGCAGTCTTTATCGGAAAGCGTGGCAAGTTTGA 669
||||||| ||| | | ||||||| ||||||||| ||||| |||| ||||| ||||||||
Sbjct 2297 ATGATGGACAATTTATGGAGATCACAGTGCAGTCGTTATCTGAAAACGTGGGAAGTTTGA 2356
Query 670 AGGAGAAAATAGCTGGGGAGATTCAAATTCCAGCAAACACACACAAGATAAGTGGAAAAA 729
|||||||||||||||||||||||||||| |||||||||| ||| ||| | |||||||||
Sbjct 2357 AGGAGAAAATAGCTGGGGAGATTCAAATCCCAGCAAACAAACAGAAGTTGAGTGGAAAAG 2416
Query 730 CCGGTGTT-TTAGAGGACAACATATCACTTGCACACTACAATGTGGGAGCAGGAGAGATC 788
| || ||| ||| |||||||||| || |||||||| |||||||| ||||||||||| |||
Sbjct 2417 CAGG-GTTCTTAAAGGACAACATGTCGCTTGCACATTACAATGTCGGAGCAGGAGAAATC 2475
Query 789 CTAAC-TCTGTCT 800
||||| | |||||
Sbjct 2476 CTAACAT-TGTCT 2487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5