BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940104
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06610.1 | Symbols: | Protein of unknown function (DUF620) ... 1805 0.0
> AT5G06610.1 | Symbols: | Protein of unknown function (DUF620)
| chr5:2029897-2033723 FORWARD LENGTH=1266
Length=1266
Score = 1805 bits (977), Expect = 0.0
Identities = 1094/1151 (95%), Gaps = 6/1151 (1%)
Strand=Plus/Plus
Query 1 AAA-AAAGAGAAAGAGAGAGAATGCAGAGATTAGCTCCATTGATggaagaaccaatggat 59
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 36 AAAGAAAGAGAGAGAGAGAGAATGCAGAGATTAGCTCCATTGATGGAAGAACCAATAGAT 95
Query 60 gaagaagatcaagaagacgaaagaggaggaggaagaa-gatcgaa-gagatccaaatcat 117
||||||||||||||||| |||||||||||| ||| || |||| || |||||||||||||
Sbjct 96 GAAGAAGATCAAGAAGAAGAAAGAGGAGGAAGAA-AAGGATC-AACAAGATCCAAATCAT 153
Query 118 ggaagaaATGGATAAAGACACAATTGCAGTTCATCGTCTTCCCCAAAAAACCAGACATGA 177
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 154 GGAAGAAATGGATAAAGACACAATTGCAGTTCATCGTCTTCCCCAAGAAACCAGACATGA 213
Query 178 AGCTTCTTCTCAGTGTTATGGGATGtcctctcttccctgtccctcctctctccaaaatct 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 AGCTTCTTCTTAGTGTTATGGGATGTCCTCTCTTCCCTGTCCCTCCTCTCTCCAAAATCT 273
Query 238 ctctccAACAGGTATCGTCATCAGCACAATACATAATACAACAGTTTGCAGCAGCAACCG 297
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 274 CTCTTCAACAGGTATCATCATCAGCACAATACATAATACAACAGTTTGCCGCAGCAACCG 333
Query 298 GATGCAAGAAACTCGCAGGCGAAATAAAAAACACTTTTGTGACTGGAAAAATTACAATGA 357
||||||||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 334 GATGCAAGAAACTTGCGGGCGAAATCAAAAACACTTTCGTGACCGGAAAAATCACAATGA 393
Query 358 CTATGGTGAATGATCTTAATAGCTCAACTGCGGTTAGTAGTGCCTCGTCTGTGTCTCATA 417
||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 394 CTATGGTGAGTGATATTAATAGCTCAACCGCGGTCAGTAGTGCCTCGTCTGTGTCTCATA 453
Query 418 AAGGATGCTTCGTCATGTGGCAAATGCTACCTGAAAAATGGCTCATCGAGTTGGTTGGTG 477
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 454 AGGGATGCTTTGTCATGTGGCAAATGCTACCTGAAAAATGGCTTATCGAGTTGGTTGGTG 513
Query 478 GTGGCCATAAGGTTTCAGCCGGAAGTGATGGAGAAATTACTTGGCGTTATACACCATGGC 537
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 514 GCGGCCATAAGGTTTCAGCCGGTAGTGATGGAGAAATTACTTGGCGTTATACACCATGGC 573
Query 538 TCGGTGATCACGCAGCTAAAGGCGCCATACGGCCTTTGCGACGTGCTCTACAAGGGTTGG 597
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 574 TCGGTGATCATGCAGCTAAAGGTGCCATAAGGCCTTTGCGACGTGCTCTACAAGGGTTGG 633
Query 598 ATCCTCTAACAATATCATCAGTTTTTTCATCGGCACAATTCGTTGGAGAGAAAGAAATCA 657
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 634 ATCCTCTAACCATTTCATCAGTTTTCTCATCGGCACAATTCGTTGGAGAGAAAGAAATCA 693
Query 658 ATGGAAAGGATTGTTTCATTCTCAAGTTATCAACCGACCAAATTGATTTATCACGACGCA 717
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 694 ATGGGAAGGATTGTTTCATTCTCAAGTTATCAACCGACCAAATCGATTTATCAAAACGCA 753
Query 718 GTGACTCTACGGCTGAGATGATCAAACACGTCGCATTTGGTTACTTCAGCCAGAAAAGTG 777
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 754 GTGACTCTACCGCTGAGATGATCAAACACGTCGCATTCGGTTACTTCAGCCAAAAAAGTG 813
Query 778 GCCTCTTAATATGCCTTGAAGACTCTTCCTTAACCAGGATTCAGATACCAGGAACTGTGC 837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GCCTCTTAATTTGCCTTGAAGACTCTTCCTTAACCAGGATTCAGATACCAGGAACTGTGC 873
Query 838 CAACATATTGGGAGACCTCAATGTCGTCGTGTATGGAAGATTATCGAGCAATCGAAGGTA 897
||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||
Sbjct 874 CAACATATTGGGAGACCTCAATGTCGTCGTGGATGGAAGACTACCGAGCAATAGAAGGTA 933
Query 898 GTGAAGTGGTAATAGCACACTCAGGTAAAACAGATGTGTTAATCTCAAGATTTGGAGAGA 957
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 934 GTGAAGTGGTAATAGCACACTCAGGTAAGACAGATGTGTTAATCTCAAGATTTGGAGAAA 993
Query 958 CTCTCAAGGGAGGAATCTCTGTGACTCGAATGGAAGAGAAATGGACTATAGACGATGTTG 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CTCTCAAAGGAGGAATCTCTGTGACTCGAATGGAAGAGAAATGGACTATAGACGATGTTG 1053
Query 1018 CATTCGACGTGCCTGGCCTTTCCGTTGATTGTTTTATTCCACCTAAAGAGATGAAGATGG 1077
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1054 CATTCGACGTGCCTGGTCTCTCCGTTGATTGTTTTATTCCTCCTAAAGAGATGAAGATGG 1113
Query 1078 ATTTTCATCACCAAGATGCTCAAAAACATTTACCAAACTACAATAGATGAT-GAGGCAAA 1136
||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1114 ATTTTCACCACCAAGATGCTCAAAAACATTTACCAAACTACAATACATGATCGAGGCAAA 1173
Query 1137 ACTGTAAAATT 1147
|||||||||||
Sbjct 1174 ACTGTAAAATT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5