BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940109
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06660.1 | Symbols: | Protein of unknown function DUF106, t... 983 0.0
AT3G12030.1 | Symbols: | Protein of unknown function DUF106, t... 606 6e-173
> AT5G06660.1 | Symbols: | Protein of unknown function DUF106,
transmembrane | chr5:2046810-2047794 FORWARD LENGTH=985
Length=985
Score = 983 bits (532), Expect = 0.0
Identities = 574/595 (96%), Gaps = 0/595 (0%)
Strand=Plus/Plus
Query 20 CAATGGCCACCGCGATACCTCTCTTCGCTTCTTTCAAGTACGCCGATAGTCTCACCGTCG 79
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 52 CAATGGCCACCGCGATACCTCTCTTCGCCTCTTTCAAGTATGCCGATAGTCTCACCGTCG 111
Query 80 TCGGAATCTCCTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCTAATCTACC 139
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 112 TTGGAATCTCTTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCTAATCTATC 171
Query 140 GCACGAGCTCTTACAAATCGTTGAAATCTTCCATTGACAAGGCCTCCAAGAAGCTGGAGA 199
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 172 GCACAAGCTCTTACAAATCGTTGAAATCTTCCATTGACAAAGCCTCTAAGAAGCTTGAGA 231
Query 200 CGATGAAGACTGATAATCCTTCCTCGAAGCTAACAAACAAGAAATCGAAGACGAAGAAGA 259
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CGATGAAGACAGATAATCCTTCCTCGAAGCTAACAAACAAGAAATCGAAGACGAAGAAGA 291
Query 260 TAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTGTCGCTCTTCAAGTTTA 319
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 292 TAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTATCACTCTTCAAGTTTA 351
Query 320 AATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTTGTGTTTGGGTTGTTGAATTCGCTTT 379
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 352 AATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTCGTGTTTGGATTGTTGAATTCGCTTT 411
Query 380 TCGAAGGGAAAGTTGTAGCGAAGCTTCCGTTTCATCCGATTACGATTGTGAGGAAGATGA 439
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TCGAAGGGAAAGTGGTAGCGAAGCTTCCGTTTCATCCGATTACGATTGTGAGGAAGATGA 471
Query 440 GTCATAGAGGATTGAAAGGAGATGATTCCACTGATTGTTCCATGGCTTTTCTTTATCTGC 499
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTCATAGAGGATTGAAAGGCGATGATTCCACTGATTGTTCCATGGCTTTTCTTTATCTGC 531
Query 500 TTTGTTCTATCAGTATTAGGACTAATCTGCAGAAGTTTTTGGGTTTCTCTCCACCTAGAG 559
|||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 532 TTTGTTCTATTAGTATAAGGACTAATCTGCAGAAGTTCTTGGGTTTCTCTCCACCTAGAG 591
Query 560 GAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCCGATCCAAAGACGAATTGATC 614
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 592 GAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCTGATCCAAAGACCAATTGATC 646
> AT3G12030.1 | Symbols: | Protein of unknown function DUF106,
transmembrane | chr3:3834361-3835075 REVERSE LENGTH=715
Length=715
Score = 606 bits (328), Expect = 6e-173
Identities = 512/601 (85%), Gaps = 12/601 (2%)
Strand=Plus/Plus
Query 20 CAATGGCCACCGCGATACCTCTCTTCGCTTCTTTCAAGTACGCCGATAGTC-TCACCGTC 78
||||||| || |||| || |||||||| |||||||| ||||||||||| | | || |||
Sbjct 19 CAATGGCGACTACGATTCCACTCTTCGCCTCTTTCAAATACGCCGATAG-CTTAACGGTC 77
Query 79 GTCGGAATCTCCTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCTAATCTAC 138
|| ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct 78 GTAGGAATCTCCTTCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCTTAATCTAC 137
Query 139 CGCACGAGCTCTTACAAATCGTTGAAAT-CTTCCATTGACAAGGCCTCCAAGAAGCTGGA 197
|| || ||||| |||||||| ||||||| | ||||||||||||||| | ||||| || ||
Sbjct 138 CGTACCAGCTCATACAAATCCTTGAAATAC-TCCATTGACAAGGCCACGAAGAAACTCGA 196
Query 198 GACGATGAAGACTGATAATCCTTCCTCGAAGCTA-ACAAACAAGAAATCGAAGACGAAGA 256
||| |||||||| || ||||| || || |||||| || | |||||||| ||||||||||
Sbjct 197 GACAATGAAGACAGAGAATCCATCGTCAAAGCTATCCATA-AAGAAATCAAAGACGAAGA 255
Query 257 AGATAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTGTCGCTCTTCAAGT 316
|||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 256 AGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTCTTCAAGT 315
Query 317 TTAAATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTTGTGTTTGGGTTGTTGAATTCGC 376
| ||||| || ||||||||||| |||||||||| || || || || ||| | ||||| |
Sbjct 316 TCAAATCCGGCGCCGTTGTGGCACTGGTTCTCTTCGTCGTCTTCGGATTGCTCAATTCAC 375
Query 377 TTTTCGAAGGGAAAGTTGTAGCGAAGCTTCCGTTT-CATCCGATTACGATTGTGAGGAAG 435
| |||||||| ||||| || ||||||||||| ||| |||||||| ||||| |||| ||||
Sbjct 376 TATTCGAAGGTAAAGTCGTCGCGAAGCTTCC-TTTCCATCCGATCACGATAGTGAAGAAG 434
Query 436 ATGAGTCATAGAGGATTGAAAGGAGATGATTCC-ACTGATTGTTCCATGGCTTTTCTTTA 494
|||||||| || ||| ||||||| ||||| ||| || |||||||||||||||||||| ||
Sbjct 435 ATGAGTCACAGGGGACTGAAAGGTGATGA-TCCGACGGATTGTTCCATGGCTTTTCTCTA 493
Query 495 TCTGCTTTGTTCTATCAGTATTAGGACTAATCTGCAGAAGTTT-TTGGGTTTCTCTCCAC 553
|||||| ||||| || ||||| || || ||||| ||||| ||| | |||||| ||||| |
Sbjct 494 TCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTT-TCTCCGC 552
Query 554 CTAGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCCGATCCAAAGACGAATTGAT 613
| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||
Sbjct 553 CGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCAACTGAT 612
Query 614 C 614
|
Sbjct 613 C 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5