BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940114

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein ...   124    5e-28


> ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein 
| chrC:37375-39579 REVERSE LENGTH=2205
Length=2205

 Score =  124 bits (67),  Expect = 5e-28
 Identities = 73/76 (96%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  246  GTACAAGACCCTTTACATGTAAGACCGATTGCTCATGCTATTTGGGATCCTTATTTTGGT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  232  GTACAAGACCCTTTACATGTAAGACCGATTGCTCATGCTATTTGGGATCCTCATTTTGGT  291

Query  306  CAACTGCCTGTGGAAG  321
            |||| | |||||||||
Sbjct  292  CAACCGGCTGTGGAAG  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19554154361


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5