BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940115
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06710.1 | Symbols: HAT14 | homeobox from Arabidopsis thalia... 1616 0.0
> AT5G06710.1 | Symbols: HAT14 | homeobox from Arabidopsis thaliana
| chr5:2068065-2070361 REVERSE LENGTH=1328
Length=1328
Score = 1616 bits (875), Expect = 0.0
Identities = 985/1039 (95%), Gaps = 3/1039 (0%)
Strand=Plus/Plus
Query 1 TCTTATTTTCTTCGTAAGAGATGGAACTAGCGTTGTCTCTAGGCGACAATACTAAGAAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCTTATTTTCTTCGTAAGAGATGGAACTAGCGTTGTCTCTAGGCGACAATACTAAGAAAC 117
Query 61 AGTTATCTTTTGTGGAGATGAACTCGAAGATTAATAATCCCTCTGCCTCGTCGACCTCAA 120
|||| |||||| |||||| |||||||||||||||||||||||||| ||||||||| || |
Sbjct 118 AGTTCTCTTTTATGGAGAAGAACTCGAAGATTAATAATCCCTCTGTCTCGTCGACATCTA 177
Query 121 CTTCCGACAAGGATCTTGGGTTCTGCATGGGTTTAGATGTTGCTTTTGGTGGTCACAAAT 180
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 178 CTTCCGAGAAGGATCTTGGGTTCTGCATGGCTTTAGATGTTGCTTTTGGTGGTCACAGAT 237
Query 181 CGTTGTCATCCTCTTCGTCTCCGCCGGTAGAAGATGAGAAGAAGAAACCGGTGCCGAGAG 240
||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||
Sbjct 238 CGTTGTCATCCTCTTCGTCTCCGTCGGTAGAGGATGAGAAGAAGAAACCGGCGCCCAGAG 297
Query 241 CAGAAAATTCTGATGGAA-TTAGGGTTTCGTCTCCAGTAGATCCACCACTACAGCTTCAG 299
|| |||| ||||| ||| |||||||||||||| | |||||||||||| |||||||||||
Sbjct 298 CAAAAAAATCTGA-CGAATTTAGGGTTTCGTCTTCTGTAGATCCACCATTACAGCTTCAG 356
Query 300 CTTCACTTACCTAATTGGCTCCCTGAGAACAGTAAGGGTCCACAAGGAGGACGAATGCTC 359
|||||||| |||||||||||||||||||||||||| |||| |||||||||| |||||| |
Sbjct 357 CTTCACTTCCCTAATTGGCTCCCTGAGAACAGTAAAGGTCGACAAGGAGGAAGAATGCCC 416
Query 360 TCAGGAGCAGCTATGGTTGCAgaggaggaagaggaggaggaggaAGTGGTGCCTAGTATG 419
| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 417 TTAGGAGCAGCTACGGTTGTGGAGGAGGAAGAGGAGGAGGAGGAAGCGGTGCCTAGTATG 476
Query 420 TCAGTATCGCCGCCGGATAGCGTAACGTCGTCGTTTCAATTGGACTTTGGGATCAAAAGT 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 477 TCAGTATCGCCGCCGGATAGTGTAACGTCGTCGTTTCAATTGGACTTTGGGATTAAAAGT 536
Query 480 TATGGTTACGAGAGAAGAAGCAATAAGAGAGATATTGATGATGAAGTGGAGAGATCTGCT 539
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 TATGGTTATGAGAGAAGAAGCAATAAGAGAGATATTGATGATGAAGTGGAGAGATCAGCT 596
Query 540 TCAAGAGCCAGCAATGAAGACAACGATGAAGAAAATGGATCCACTAGGAAGAAACTTAGA 599
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 597 TCAAGAGCCAGCAACGAAGACAACGATGACGAGAATGGATCCACTAGGAAGAAACTTAGA 656
Query 600 CTCTCTAAAGACCAATCTGCTTTTCTTGAAGACAGTTTCAAAGAACACAGTACCCTTAAT 659
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 657 CTCTCCAAAGACCAATCTGCTTTTCTTGAAGACAGCTTCAAAGAACACAGTACCCTTAAT 716
Query 660 CCTAAACAGAAGATTGCGTTGGCAAAGCAGTTGAATCTTCGTCCTCGTCAGGTTGAAGTT 719
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 CCTAAACAGAAGATTGCATTGGCGAAGCAGTTGAATCTTCGTCCTCGTCAGGTTGAAGTC 776
Query 720 TGGTTTCAAAACAGACGAGCCAGGACAAAACTGAAGCAAACGGAAGTGGACTGTGAATAC 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 777 TGGTTTCAAAACAGACGAGCCAGGACAAAGCTGAAGCAAACGGAAGTGGACTGTGAATAC 836
Query 780 CTAAAGAGATGCTGTGAGTCACTAACCGAAGAAAACCGGAGGCTTCAAAAAGAGGTTAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTAAAGAGATGCTGTGAGTCACTAACCGAAGAAAACCGGAGGCTTCAAAAAGAGGTTAAA 896
Query 840 GAATTGAGAACCTTGAAGACTTCCACACCCTTCTACATGCAACTTCCGGCCACAACTCTC 899
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 897 GAATTGAGAACCTTGAAGACTTCCACACCCTTTTACATGCAACTTCCGGCCACTACTCTC 956
Query 900 ACTATGTGCCCTTCTTGCGAACGTGTTGCCACTTCAGCAGCACAGCCGGCCACGTCAGCT 959
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 ACTATGTGCCCTTCTTGTGAACGTGTTGCCACTTCAGCAGCACAGCCCTCCACGTCAGCT 1016
Query 960 GCCCACAACCTCGGTTTGTCCACGTCATCATTGATTCCGGTTAAGCATCGGCCGGTACAA 1019
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1017 GCCCACAACCTCTGTTTGTCCACGTCATCATTGATTCCGGTTAAGCCTCGGCCGGC-CAA 1075
Query 1020 ACAAGTCTCATGAAAGCAC 1038
|||||| ||||||||||||
Sbjct 1076 ACAAGTTTCATGAAAGCAC 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5