BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940126
Length=2242
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06820.1 | Symbols: SRF2 | STRUBBELIG-receptor family 2 | ch... 3736 0.0
> AT5G06820.1 | Symbols: SRF2 | STRUBBELIG-receptor family 2 |
chr5:2112869-2116754 FORWARD LENGTH=2424
Length=2424
Score = 3736 bits (2023), Expect = 0.0
Identities = 2174/2247 (97%), Gaps = 10/2247 (0%)
Strand=Plus/Plus
Query 1 AGTCGAGAGAGATTCTAGCGATGAAAACCAAACAGCAACTGCGATTCCTCGCTACAATTC 60
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 106 AGTCGAGAGAGATTATAGTGATGAAAACCAAACAGCAATTGCGATTCCTCGCTACAATTC 165
Query 61 TGTTCACGACGATTCTATTTGTGCTGGCGAAGACTGATACTGATCCGCTTGAAGTTTTGG 120
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 166 TGCTCACGACGATTCTATTTGTTCTGGCGAAGACTGATACTGATCCGCTTGAAGTTTTGG 225
Query 121 CTCTTCAAGATCTCTACAAGTCTCTGAGAAATCCAGAGA-AGCTGAGAGGATGGAGATTG 179
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 226 CTCTTCAAGATCTCTACAAGTCTCTGAGAAATCCAGA-ACAGCTGAGAGGATGGAGATTA 284
Query 180 GAGGGTGGAGATCCATGTGGAGAAGCCTGGATCGGAGTTTCTTGTTCTGGCTCTTCTATA 239
||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||||||||
Sbjct 285 GAGGGTGGAGATCCATGCGGAGAAGCCTGGCTGGGAATTTCTTGTTCTGGTTCTTCTATA 344
Query 240 GTAGACCTACAACTGAGAGAGTTAAAGCTTTTGGGAACCCTTGGAAACCAGCTTCAACAT 299
||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 345 GTAGACCTACAACTGCGAGAGTTAAAGCTTTTGGGCAGCCTTGGAAACCAGCTTCAACAT 404
Query 300 CTCCACAATTTGAAGATTCTGGATGTTAGCTTCAATAACCTTGAAGGCGAAATTCCTTTT 359
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 405 CTCCACAATTTGAAGATTCTGGATGTAAGCTTCAATAACCTTGAGGGTGAAATTCCGTTT 464
Query 360 GGCTTGCCTCCAAACGCTACTCATATAAACATGGCTTACAATAATCTGACCCAAAGTATC 419
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 465 GGCTTGCCTCCTAACGCTACTCATATAAACATGGCTTACAACAATCTGACCCAAAGTATC 524
Query 420 CCTTTTTCCTTACCTCTTTTGGCATCTCTTCAGTCTCTAAATTTGAGCCATAATTCATTA 479
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 525 CCTTTTTCCTTACCTCTTATGACATCTCTTCAGTCTTTAAATTTGAGCCATAATTCATTA 584
Query 480 TCTGGACCTCTTGGAAATGTGTTTTCTGGGTTACAGATTAAAGAAATGGATCTGTCATTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCTGGACCTCTTGGAAATGTGTTTTCTGGGTTACAGATTAAAGAAATGGATCTGTCATTC 644
Query 540 AATAACCTGACGGGAGATCTACCAAGCTCTTTT-GGATCTCTAATGAATCTGACTTCACT 598
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 645 AATAACCTGACGGGAGATCTACCGAGCTCTTTTGGGA-CTCTAATGAATCTGACTTCACT 703
Query 599 GTACCTCCAGAACAACAGATTAACAGGATCAGTCATCTATCTCGCGGATCTTCCTTTAGC 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 704 GTACCTCCAGAACAACAGATTAACAGGATCAGTCATATATCTCGCGGATCTTCCTTTAGC 763
Query 659 TGACCTGAACATCGAAGATAACCAGTTCAGTGGTATTATCCCAAGTCATTTTCAGTCCAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGACCTGAACATCGAAGATAACCAGTTCAGTGGTATTATCCCAAGTCATTTTCAGTCCAT 823
Query 719 TCCTCATCTGTGGATTTGGGGAAACAAGTTCCATGTAGAGCCCAACTATAAACCTTGGAA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 824 TCCTCATCTGTGGATTTGGGGAAACAAGTTCCATGTAGAGCCCAACTATAAACCGTGGAA 883
Query 779 GTTCCCTTTGGACGTCAGACCGTTGATACAAAATGCTACTGGCTATCCAACAACAGAGTC 838
|||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 884 GTTCCCATTGGACGTCAGACCACTGATACAAAATGATACTGGCTATCCAACAACAGAGTC 943
Query 839 AAGTGCCATTATGAACTTTCCCAG-CC-----CTCAGAAGGTCAAAAAGAAGAAGAAAGG 892
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 944 AAGTGCCATTATGAATTTTCCCAGACCTGAGACTCAGAAGGTCAAAAAGAAGAAGAAAGG 1003
Query 893 CATAGGAGCAGGAAGTACCTTTTTACTGGTTGGTGGGTTAGCTTTGCTGGGAACTTTCTT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CATAGGAGCAGGAAGTACCTTTTTACTGGTTGGTGGGTTAGCTTTGCTGGGAACTTTCTT 1063
Query 953 TGCACTTTTCGCAGTCCGCATGAATCATCGACGAGCACAAAACCTTGCTGCTAGTCACAT 1012
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1064 TGCACTTTTCGCAGTTCGCATGAATCATCGACGTGCACAAAACCTTGCTGCTATTCACAG 1123
Query 1013 AAGCAACAATAGCACAGCATACTCTCTTCCAGTCAGTACAAGCCGAGAATATCCTGTTGC 1072
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1124 AAGCAACAATAGCATAGCATACTCTCTTCCAGTCAGTACAGGCCGAGAATATCCTGTTGC 1183
Query 1073 AACTGAAGATAACCCACAGATGAAAAGGGTCCAGCCCCCACCAGTTCCACAGCTCAGACA 1132
||||||||||||||||||||| |||||| ||||||| ||||||| ||| || ||||||||
Sbjct 1184 AACTGAAGATAACCCACAGATTAAAAGGTTCCAGCCACCACCAGCTCCCCAACTCAGACA 1243
Query 1133 TTTACCTTCTCCACCTGTCAGAATCGATAAATCTGCAAGAAGAAAGAGCTTCTCTGCCAC 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1244 TTTACCTTCTCCACCTGTCAGAATCGATAAATCTGCAAGAAGAAAGAGCTTCTCTGCAAC 1303
Query 1193 ATGTCAATATCCATCGTTCGCTAAGCTTTTCTCAGCTGCAGAGCTTCAACTGGCAACTAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 ATGTCAATATCCATCGTTCGCTAAGCTTTTCTCAGCTGCAGAGCTTCAACTGGCAACTAA 1363
Query 1253 CTGTTTCAGCGAGGAAAATCTACTCGGAGAGGGTCCTCTTGGTTCTGTTTACAGAGCAAA 1312
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CTGTTTCAGTGAGGAAAATCTACTCGGAGAGGGTCCTCTTGGTTCTGTTTACAGAGCAAA 1423
Query 1313 GTTGCCTGATGGTCAGTTTGCCGTCGTCAGAAACATCCCAATGTCTTCGCTGTCTTTACA 1372
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1424 GTTGCCTGATGGTCAGTTTGCCGTCGTCAGAAACATCCCAATGTCTTCGCTATCTTTACA 1483
Query 1373 TGAAGAGGAACAATTTACTGAAGTACTTCAGACAGCCTCCAAACTAAGACACCCAAACAT 1432
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1484 TGAAGAGGAACAGTTTACTGAAGTGCTTCAGACAGCCTCCAAACTAAGACACCCAAACAT 1543
Query 1433 TGTTACACTTCTCGGTTTCTGCATTGAGAATGGAGAGCATCTTCTTGTCTATGAGTATGT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 TGTTACACTTCTCGGTTTCTGCATTGAGAATGGAGAGCATCTTCTTGTCTATGAGTATGT 1603
Query 1493 TGGGCATTTGTCGTTGTACAATGCTATGCATGATGAGGTATACAAGCCACTTTCTTGGGG 1552
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TGGCCATTTGTCGTTGTACAATGCTATGCATGATGAGGTATACAAGCCACTTTCTTGGGG 1663
Query 1553 CTTGCGTCTCCGCATTGCTATTGGAGTTGCCCGAGCTCTGGACTATTTGCACTCGTCGTT 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 CTTGCGTCTCCGCATTGCTATTGGAGTTGCCCGAGCTCTGGACTATTTGCACTCGTCGTT 1723
Query 1613 TTGCCCTCCTATAGCCCATAGCGATCTGAAAGCAACAAACATCTTACTTGACGAAGAACT 1672
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1724 TTGCCCTCCTATAGCCCATAGCGATCTGAAAGCAACAAACATCTTACTAGACGAAGAACT 1783
Query 1673 TACACCTCGTATTGCTGACTGTGGGCTTGCTAGTTTAAGGCCACTTACAAGCAACAGTGT 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 TACACCTCGTATTGCTGACTGTGGGCTTGCTAGTTTAAGGCCACTTACAAGCAACAGTGT 1843
Query 1733 TAAACTTCGGGCTTCAGAAATAGCGATACAAAACACTGGCTACATAGCACCAGAACATGG 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 TAAACTTCGGGCTTCAGAAATAGCGATACAAAACACTGGCTACATAGCACCAGAACATGG 1903
Query 1793 ACAACCAGGAAGCAGTGGCACAAAGAGTGACACTTATGCACTGGGAGTGCTACTCTTGGA 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1904 ACAACCAGGAAGCAGTGGCACAAAGAGTGACACTTATGCACTGGGAGTGCTACTCTTAGA 1963
Query 1853 ACTGTTAACAGGAAGGAAAGCATTTGACAGCTCACGTCCCCGAGGAGAACAGCTACTGGT 1912
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1964 ACTGTTAACAGGAAGGAAAGCATTTGACAGCTCACGACCCCGAGGAGAACAGCTACTGGT 2023
Query 1913 GAAATGGGCATCAACCAGACTGCATGACAGGCGAAGCTTAGAACAGATGATTGATGGAGG 1972
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2024 GAAATGGGCATCAACCAGACTTCATGACAGGCGAAGCTTAGAACAGATGATTGATGGAGG 2083
Query 1973 CATAGCTGGCACATTCTCCTCAAGAGTCGCTTCACAATACGCAGACATAATCTCCCTATG 2032
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2084 CATAGCCGGCACATTCTCCTCAAGAGTCGCCTCACAATACGCAGACATTATCTCCCTATG 2143
Query 2033 CACTCAGGTAGAGAAGGAGTTCAGACCAGCGGTTTCAGAAATAGTGGAAGCCCTCACTGC 2092
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2144 CACTCAGGCAGAGAAGGAGTTCAGACCACCGGTTTCAGAAATAGTGGAAGCCCTCACTGC 2203
Query 2093 ACTGATACAGAAACAGAACAAGGAAGCAAGCAGTAGTGTAGCAGACAAGACCGACCCTTT 2152
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 GCTGATACAGAAACAGAACAAGGAAGCAAGCAGTAGTGTAGCAGACAAGACCGACCCTTT 2263
Query 2153 TAGTAAATCTTTCTGCTCATCACGCACTCGCTTCATCTCCTCTCCTACCTTCAGCTACCT 2212
||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 2264 TAGTAAATCTTTCTGCTCAACACGCACACGCTTCATCTCCTCACCTACCTTCAGCTACCT 2323
Query 2213 CTCCTCTTGACCATTTTCTGTATCTCT 2239
|||||||||| ||||||||||||||||
Sbjct 2324 CTCCTCTTGAACATTTTCTGTATCTCT 2350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111244407720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5