BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940133

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06670.1 | Symbols:  | P-loop containing nucleoside triphosp...   132    2e-30


> AT5G06670.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr5:2048243-2055019 
REVERSE LENGTH=2961
Length=2961

 Score =  132 bits (71),  Expect = 2e-30
 Identities = 86/93 (92%), Gaps = 2/93 (2%)
 Strand=Plus/Plus

Query  79   GATCGTGTTTTCGTGCCTACGACGACTATACACAATGTCTATGATGTTGCTGCTCAGCAT  138
            ||||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct  328  GATCGTGTTTTCGGGCCTACTACGACTACACGCAATGTCTATGATGTTGCTGCTCAGCAT  387

Query  139  GTCGTTAATGGTGCTATGGTGCGGGGATCAATG  171
            ||||||||||||||||||| | |||| ||||||
Sbjct  388  GTCGTTAATGGTGCTATGGCG-GGGG-TCAATG  418



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11259975776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5