BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940134

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06890.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   171    3e-42


> AT5G06890.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr5:2135743-2135943 FORWARD LENGTH=201
Length=201

 Score =  171 bits (92),  Expect = 3e-42
 Identities = 162/193 (84%), Gaps = 16/193 (8%)
 Strand=Plus/Plus

Query  1    TTTCTGTTCCAAACTTGAATGATGGGCAAGTCATTGAGATCACAGTGCAG---------G  51
            ||||||||||| || | |||||||||||||||||||||||||||||||||         |
Sbjct  5    TTTCTGTTCCAGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATCCG  64

Query  52   AA--CGTGGCA-GATTTGAAGGAGAAAATAGCAACCAAAATGGAGTTAAGTGGAAAAGCC  108
            ||  ||||||| | |||||| |||||| |||||| |||| || ||||||| |||||||||
Sbjct  65   AAAACGTGGCAAG-TTTGAAAGAGAAAGTAGCAAACAAACTGAAGTTAAGGGGAAAAGCC  123

Query  109  GGGGTTTTAAAAGAC-A--ACAAGTCACTTGCACATTACAATGTTGGAGCAGGAGACATC  165
            ||| ||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||
Sbjct  124  GGGATTTTAAAGGACGATGACAAGTCACTTGCACATTACAATGTTCGAGCAGGTGACATC  183

Query  166  ATAACACTTTCTT  178
             ||||||| ||||
Sbjct  184  CTAACACTGTCTT  196



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5