BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940134 Length=203 Score E Sequences producing significant alignments: (Bits) Value AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein | ... 171 3e-42 > AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein | chr5:2135743-2135943 FORWARD LENGTH=201 Length=201 Score = 171 bits (92), Expect = 3e-42 Identities = 162/193 (84%), Gaps = 16/193 (8%) Strand=Plus/Plus Query 1 TTTCTGTTCCAAACTTGAATGATGGGCAAGTCATTGAGATCACAGTGCAG---------G 51 ||||||||||| || | ||||||||||||||||||||||||||||||||| | Sbjct 5 TTTCTGTTCCAGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATCCG 64 Query 52 AA--CGTGGCA-GATTTGAAGGAGAAAATAGCAACCAAAATGGAGTTAAGTGGAAAAGCC 108 || ||||||| | |||||| |||||| |||||| |||| || ||||||| ||||||||| Sbjct 65 AAAACGTGGCAAG-TTTGAAAGAGAAAGTAGCAAACAAACTGAAGTTAAGGGGAAAAGCC 123 Query 109 GGGGTTTTAAAAGAC-A--ACAAGTCACTTGCACATTACAATGTTGGAGCAGGAGACATC 165 ||| ||||||| ||| | |||||||||||||||||||||||||| ||||||| |||||| Sbjct 124 GGGATTTTAAAGGACGATGACAAGTCACTTGCACATTACAATGTTCGAGCAGGTGACATC 183 Query 166 ATAACACTTTCTT 178 ||||||| |||| Sbjct 184 CTAACACTGTCTT 196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9054243180 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5