BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940152

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07040.1 | Symbols:  | RING/U-box superfamily protein | chr5...   743    0.0  


> AT5G07040.1 | Symbols:  | RING/U-box superfamily protein | chr5:2190344-2190823 
FORWARD LENGTH=480
Length=480

 Score =  743 bits (402),  Expect = 0.0
 Identities = 455/481 (95%), Gaps = 2/481 (0%)
 Strand=Plus/Plus

Query  28   ATGTCTCCTATAAGTCCTCCGGCCAGTGGGGTTGGGCTTGGCTACGGTATAGCCATCGCC  87
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTCCTATAAGTCCTCCTGCCAGTGGGGTTGGGCTTGGCTACGGTATAGCCATCGCC  60

Query  88   GTAAGCATCCTAGTTCTCATCTCCTTTATAATGCTGGCCTCATACATCTGCATAAGGTCA  147
            ||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  61   GTAAGCATCTTGGTTCTCATATCTTTTATAATGCTGGCCTCATACATCTGCATAAGGTCA  120

Query  148  AAATCTACAGGAAGAGACGAAGCCACAAGTGACGGAGTTCTTGACTCCCCGTCGCCCGCG  207
            |||||||||||||||||||||||||| ||||||| |||||||||||  ||||| ||||||
Sbjct  121  AAATCTACAGGAAGAGACGAAGCCACTAGTGACGTAGTTCTTGACTTGCCGTCTCCCGCG  180

Query  208  GCTGAAGTGAAGCTCGGTTTGGACCGACCGGTGATAGAGTCATATCCAAGGATAGTGTTG  267
            ||||| |||||||||||| | ||||| || ||||||||||||||||||||||||||||||
Sbjct  181  GCTGAGGTGAAGCTCGGTCTAGACCGGCCAGTGATAGAGTCATATCCAAGGATAGTGTTG  240

Query  268  GGAGATAGCCGGAGATTACCGAGGCCCAACAACGGCCCATGTTCGATATGTCTATGTGAT  327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GGAGATAGCCGGAGATTACCGAGGCCCAACAACGGCCCATGTTCGATATGTCTATGTGAT  300

Query  328  TACGAGGCTAGGGAACCGGTTCGGTGTATACCGGAATGTAATCACTGCTTCCACACTGAT  387
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TACGAGGCTAGGGAACCCGTTCGGTGTATACCGGAATGTAATCACTGCTTCCACACTGAT  360

Query  388  TGTGTTGATGAGTGGCTCCGGACAAGTGCTACATGTCCTCTATGCAGGAACTCACCGGCT  447
            |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct  361  TGTGTTGATGAGTGGCTCCGGACAAGTGCTACGTGTCCTCTTTGTAGGAACTCACCGGCT  420

Query  448  CCGTCTAGGCTAGCCACACCATTGTCCGATTT-GATCCCACTCGCCTTTCAAATTAGGTG  506
            || ||||||||||||||||| || ||||| || | ||||||||||||||||||| |||||
Sbjct  421  CCCTCTAGGCTAGCCACACCCTTATCCGACTTAG-TCCCACTCGCCTTTCAAATCAGGTG  479

Query  507  A  507
            |
Sbjct  480  A  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25669649117


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5