BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940156
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07070.1 | Symbols: CIPK2, SnRK3.2 | CBL-interacting protein... 2113 0.0
AT5G58380.1 | Symbols: CIPK10, PKS2, SIP1, SNRK3.8 | SOS3-inter... 845 0.0
> AT5G07070.1 | Symbols: CIPK2, SnRK3.2 | CBL-interacting protein
kinase 2 | chr5:2196434-2198114 REVERSE LENGTH=1681
Length=1681
Score = 2113 bits (1144), Expect = 0.0
Identities = 1297/1371 (95%), Gaps = 9/1371 (1%)
Strand=Plus/Plus
Query 23 GATGGAGAACAAACCAAGTGTATTAACTAAAAGATATGAAGTTGGGAGGTTATTGGGTCA 82
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GATGGAGAACAAACCAAGTGTATTAACTGAAAGATATGAAGTTGGGAGGTTATTGGGTCA 60
Query 83 AGGTACTTTTGCTAAAGTTTATTATGGAAGGAGTATTCATACCAACGAGAGTGTAGCTAT 142
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 61 AGGTACTTTTGCTAAAGTGTATTTTGGAAGGAGTAATCATACCAACGAGAGTGTAGCTAT 120
Query 143 CAAGATGATTGACAAGGACAAAGTTATGAGAGTCGGGCTTAGCGAGCAAATCAAGAGAGA 202
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 121 CAAGATGATTGACAAGGACAAAGTTATGAGAGTCGGGCTTAGCCAGCAAATCAAGCGAGA 180
Query 203 GATCTCTGTGATGAGGATCGCTAAACACCCGAATGTCGTGGAGTTATACGAGGTTATGGC 262
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GATCTCTGTAATGAGGATCGCTAAACACCCGAATGTCGTTGAGTTATACGAGGTTATGGC 240
Query 263 AACAAAGTCGAGGATTTACTTTGTTATTGAGTATTGTAAAGGTGGTGAGCTTTTCACCAA 322
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TACAAAGTCAAGGATTTACTTTGTTATTGAGTATTGTAAAGGTGGTGAGCTTTTCAACAA 300
Query 323 GGTTGCAAAAGGGAAACTTAGAGAGGATGTTGCTTGGAAGTATTTTTATCAGCTTATTAG 382
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTGCAAAAGGAAAACTTAAAGAAGATGTTGCTTGGAAGTATTTTTATCAGCTTATTAG 360
Query 383 CGGGGTTGATTTTTGTCATAGTCGCGGAGTGTATCACCGCGACATTAAGCCAGAGAATCT 442
| ||||||||||||||| || |||||||| |||||||||||||||||||| || |||||
Sbjct 361 TGCGGTTGATTTTTGTCACAGCCGCGGAGTTTATCACCGCGACATTAAGCCGGAAAATCT 420
Query 443 GTTGTTGGATGACAATGATAATCTTAAGATATCTGATTTTGGTTTAAGCGCGCTTGCTGA 502
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 421 TTTGTTGGATGACAATGATAATCTTAAGGTATCTGATTTTGGTTTAAGTGCGCTTGCTGA 480
Query 503 TTGCAAGCGTCAAGATGGTCTTTTACATACAACTTGTGGTACACCTGCTTATGTTGCGCC 562
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGCAAGCGGCAAGATGGTCTTCTACATACAACTTGTGGTACACCTGCTTATGTTGCGCC 540
Query 563 CGAGGTTATTAACCGAAAAGGATATGATGGTACGAAAGCGGATATTTGGTCTTGTGGTGT 622
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 541 CGAGGTTATTAACCGAAAAGGATACGAGGGTACGAAAGCGGATATTTGGTCTTGTGGTGT 600
Query 623 TGTCTTGTTTGTTCTTTTGGCTGGTTATCTCCCTTTCCATGACTCTAATCTAATGGAGAT 682
||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 601 TGTTTTGTTTGTTCTTTTGGCTGGTTATCTTCCTTTCCATGACACTAATCTTATGGAGAT 660
Query 683 GTATAGGAAGATAGGTAAAGCAGAGTTCAAGTGTCCCAGCTGGTTTGCCCCTGAAGTAAA 742
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 661 GTATAGGAAGATAGGTAAAGCAGACTTCAAGTGTCCCAGCTGGTTTGCTCCTGAGGTAAA 720
Query 743 GAGACTATTGTGTAAGATGTTTGACCCTAACCATGAGACTAGAATCACTATTGCAAAAAT 802
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGACTATTGTGTAAGATGTTGGACCCTAACCATGAGACTAGAATCACTATTGCAAAAAT 780
Query 803 CAAGGAGAGTTCTTGGTTCAGAAAAGGTTTGCATTTGAAGCAAAAGAAGATGGAAAAGAT 862
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 781 CAAGGAGAGTTCTTGGTTCAGAAAGGGTTTGCATTTGAAGCAAAAAAAGATGGAAAAGAT 840
Query 863 GGAGAAACAACAAGTCAGAGAGGCTACTCATCACATGGAAGCTGGAGGTTCAGGTCTAAA 922
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 841 GGAGAAACAACAAGTCAGAGAGGCTACTAATCCCATGGAAGCTGGAGGTTCAGGCCAAAA 900
Query 923 TGAAAACAGAGAAAACCACGAGCCGCCTCGGCTTGCTACCTTGAATGCTTTCGATATTAT 982
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 901 TGAAAACGGAGAAAACCACGAGCCGCCTCGACTTGCTACCTTGAATGCTTTCGATATCAT 960
Query 983 CGCATTGTCTACGGGTTTTGGTTTGGCAGGACTTTTCGGGGACT-TATATGACAAGCGAG 1041
||| ||||||||||| |||||| ||||||||||||| ||||| | |||||||||||||||
Sbjct 961 CGCCTTGTCTACGGGGTTTGGTCTGGCAGGACTTTTTGGGGA-TGTATATGACAAGCGAG 1019
Query 1042 AATCTAGATTCGCAT-GTCAAAAACCTGCTTCAGAGATCATTTCTAAGCTAG-AGGAGGT 1099
||||||| ||||| | | |||||||||||||||||||||||||||||||||| || ||||
Sbjct 1020 AATCTAGGTTCGCGTCG-CAAAAACCTGCTTCAGAGATCATTTCTAAGCTAGTAG-AGGT 1077
Query 1100 TGCCAAGTACCTGAAGCTGAAGATAAGAAAGCAAGGCGCAGGCGTGTTCAAACTGGAACG 1159
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1078 TGCCAAGTGCCTGAAGCTGAAGATAAGAAAGCAAGGCGCAGGCTTGTTCAAACTGGAAAG 1137
Query 1160 ATTAAAGGAAGGTAAAAAAGGGA-TTTTGACGATGGATGCAGAGATCTTCCAAGTGACAC 1218
| |||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||| |
Sbjct 1138 AGTAAAGGAAGG-AAAAAACGGAATTTTGACGATGGATGCAGAGATATTCCAAGTGACGC 1196
Query 1219 CAACGTTTCACCTGGTGGAAGTGAAGAAATGTAATGGAGACACAATGGAGTACCAGAAGT 1278
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1197 CGACGTTTCACCTGGTGGAAGTGAAGAAATGTAATGGAGATACAATGGAGTATCAGAAGT 1256
Query 1279 TAATGGAGGAGGATCTTAGGCCTGCTCTGGCAGATATTGTTTGGGTTTGGCAAGGAGAGA 1338
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1257 TAGTGGAGGAGGATCTTAGGCCTGCTTTGGCAGATATTGTTTGGGTTTGGCAAGGCGAGA 1316
Query 1339 AGGAGAAAGACGAGCAGTTACTGCAGGATGAACAAGGAGAGCAAGA-CCAT 1388
|||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1317 AGGAGAAAGAGGAGCAGTTACTGCAGGATGAACAAGGAGAGCAAGAACCAT 1367
> AT5G58380.1 | Symbols: CIPK10, PKS2, SIP1, SNRK3.8 | SOS3-interacting
protein 1 | chr5:23596962-23599242 REVERSE LENGTH=1963
Length=1963
Score = 845 bits (457), Expect = 0.0
Identities = 731/863 (85%), Gaps = 19/863 (2%)
Strand=Plus/Plus
Query 5 AAGTTTGTAGATTTTAAGGATGGAGAACAAACCAAGTGTATTAACT-AAAAGATATGAAG 63
||||||||||| || | |||||| || || |||||||| || ||| | || |||||| |
Sbjct 379 AAGTTTGTAGA--TT-A-GATGGAAAATAAGCCAAGTGTTTTGACTGATAA-ATATGATG 433
Query 64 TTGGGAGGTTATTGGGTCAAGGTACTTTTGCTAAAGTTTATTATGGAAGGAGTATTCATA 123
||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||
Sbjct 434 TTGGGAGGTTATTGGGTCAAGGTACTTTTGCCAAGGTGTATTATGGAAGGAGTATTCTTA 493
Query 124 CCAACGAGAGTGTAGCTATCAAGATGATTGACAAGGACAAAG-TTATGAGAGTCGGGCTT 182
| ||| ||||||| |||||||||||||| || ||||| |||| |||||| ||| ||||||
Sbjct 494 CTAACCAGAGTGTTGCTATCAAGATGATCGATAAGGA-AAAGGTTATGAAAGTTGGGCTT 552
Query 183 AGCGAGCAAATCAAGAGAGAGATCTCTGTGATGAGGATCGCTAAACACCCGAATGTCGTG 242
| ||| || |||||||||||||||||||| |||||||| |||| |||||| || || |||
Sbjct 553 ATCGAACAGATCAAGAGAGAGATCTCTGTTATGAGGATTGCTAGACACCCTAACGTTGTG 612
Query 243 GAGTTATACGAGGTTATGGCAACAAAGTCGAGGATTTACTTTGTTATTGAGTATTGTAAA 302
||| |||| ||||| ||||||||||| ||||||| ||||||||||| ||||||||||||
Sbjct 613 GAGCTATATGAGGTCATGGCAACAAAAACGAGGATCTACTTTGTTATGGAGTATTGTAAA 672
Query 303 GGTGGTGAGCTTTTCACCAAGGTTGCAAAAGGGAAACTT-AGAGAGGATGTTGCTTGGAA 361
||||| |||||||||| ||||||||| ||||||||| || ||||| ||||||||||||||
Sbjct 673 GGTGGAGAGCTTTTCAACAAGGTTGCCAAAGGGAAA-TTGAGAGATGATGTTGCTTGGAA 731
Query 362 GTATTTTTATCAGCTTATTAGCGGGGTTGATTTTTGTCATAGTCGCGGAG-TGTATCACC 420
|| |||||||||||||| | || ||||||||||| || || || | || ||||||| |
Sbjct 732 ATACTTTTATCAGCTTATCAACGCAGTTGATTTTTGCCACAGCCGAG-AGGTGTATCATC 790
Query 421 GCGACATTAAGCCAGAGAATCTGTTGTTGGATGACAATGATAATCTTAAGATATCTGATT 480
| ||||| ||||| ||||| || ||| | ||||| ||||| ||||| ||| |||||||||
Sbjct 791 GTGACATAAAGCCGGAGAACCTATTGCTAGATGATAATGAGAATCTCAAGGTATCTGATT 850
Query 481 TTGGTTTAAGCGCGCTTGCTGATTGCAAGCGTCAAGATGGTCTTTTACATACAACTTGTG 540
| || |||||||| |||||||| |||||| | |||||||| || | || || |||||||
Sbjct 851 TCGGGTTAAGCGCCCTTGCTGACTGCAAGAGACAAGATGGCCTCCTCCACACTACTTGTG 910
Query 541 GTACACCTGCTTATGTTGCGCCCGAGGTTATTAACCGAAAAGGATATGATGGTACGAAAG 600
|||||||||| |||||||| || || || || || |||||||| |||||||| || ||||
Sbjct 911 GTACACCTGCATATGTTGCTCCAGAAGTGATCAATCGAAAAGGCTATGATGGCACAAAAG 970
Query 601 CGGATATTTGGTCTTGTGGTGTTGTCTTGTTTGTTCTTTTGGCTGGTTATCTCCCTTTCC 660
| |||||||||||||||||||| || |||||||| || ||||| || ||||| |||||||
Sbjct 971 CAGATATTTGGTCTTGTGGTGTGGTTTTGTTTGTCCTATTGGCAGGCTATCTACCTTTCC 1030
Query 661 ATGACTCTAATCTAATGGAGATGTATAGGAAGATAGGTAAAGCAGAGTTCAAGTGTC-CC 719
||||||| ||||| ||||||||||| ||||||||||| |||||||| || ||| | | ||
Sbjct 1031 ATGACTCCAATCTGATGGAGATGTACAGGAAGATAGGAAAAGCAGATTTTAAG-G-CACC 1088
Query 720 A-GCTGGTTTGCCCCTGAAGTAAAGAGACTATTGTGTAAGATGTTTGACCCTAACCATGA 778
| |||||||||| || |||||| ||| || |||||||||||| | |||||||||| |||
Sbjct 1089 AAGCTGGTTTGCTCCAGAAGTACGGAGGCTGTTGTGTAAGATGCTAGACCCTAACCCTGA 1148
Query 779 GACTAGAATCACTATTGCAAAAATCAAGGAGAGTTCTTGGTTCAGAAAAGGTTTGCATTT 838
||||||||||| || |||| ||||| ||||||||||||||||||||||||||| ||| |
Sbjct 1149 AACTAGAATCACCATCGCAAGAATCAGGGAGAGTTCTTGGTTCAGAAAAGGTTTACATAT 1208
Query 839 GAAGCA-AAAGAAGATGGA-AAA 859
||| || ||| |||||||| |||
Sbjct 1209 GAAACAGAAA-AAGATGGAGAAA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5