BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940162
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07110.1 | Symbols: PRA1.B6 | prenylated RAB acceptor 1.B6 |... 1022 0.0
> AT5G07110.1 | Symbols: PRA1.B6 | prenylated RAB acceptor 1.B6
| chr5:2206000-2206928 FORWARD LENGTH=929
Length=929
Score = 1022 bits (553), Expect = 0.0
Identities = 635/676 (94%), Gaps = 0/676 (0%)
Strand=Plus/Plus
Query 18 TGCAATGGCCTCTCCTCTTCTCCCGACTTCGACTACTCCTGATCATCTTCCCGGCGGCGA 77
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 118 TGCAATGGCTTCTCCTCTTCTCCCAACTTCGACTACTCCTGATCAACTTCCCGGCGGCGA 177
Query 78 TCCACAGTTGCTGAGCTCTCTACGCGTCCTTTTGTCCCGAGTTCTAGCCTCTGTCCGTCA 137
|||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||
Sbjct 178 TCCACAGTTGCTGAGCTCTCTACGCGTCCTCTTGTCCCGCGTTCTAGCCACCGTCCGTCA 237
Query 138 CGCTTCTGCCGATGCCCGGCCCTGGGCAGAGCTCGTTGACCGGTCAGCATTTTCCCGGCC 197
||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 CGCTTCTGCAGATGCCAGACCCTGGGCAGAGCTCGTTGACCGGTCAGCGTTTTCCCGGCC 297
Query 198 ACCATCGCTCTCCGAGGCAACGTCACGAGTAAGGAAGAACTTTTCCTACTTCCGGGCCAA 257
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 298 ACCATCGCTCTCGGAGGCAACGTCACGAGTAAGGAAGAACTTTTCCTATTTCCGAGCCAA 357
Query 258 TTACATAACCTTAGTGGCTATCTTATTGGCCGCGTCTCTGCTCACGCACCCTTTCGCTCT 317
|||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 358 TTACATAACCTTAGTGGCAATCTTACTCGCCGCGTCTCTGCTCACGCACCCTTTCGCTCT 417
Query 318 TTTCCTCCTTGCATCGCTGGCCGCTTCTTGGCTTTTCCTCTACTTTTTCCGTCCGTCTGA 377
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 418 CTTCCTCCTCGCATCGCTGGCCGCTTCTTGGCTTTTCCTCTACTTTTTCCGTCCGGCGGA 477
Query 378 TCAGCCATTGGTCATCGGAGGACGCACGTTCTCCGATCTTGAGACGCTAGGGATGCTCTG 437
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TCAGCCGTTGGTCATTGGAGGACGCACGTTCTCCGATCTTGAGACGCTAGGGATACTCTG 537
Query 438 CCTCTCCACTGTGGTGGTCATGTTCATGACCAGCGTCGGATCGCTCTTGATGTCCACTCT 497
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 CCTGTCCACTGTGGTGGTGATGTTCATGACCAGCGTTGGATCGCTCTTGATGTCCACTCT 597
Query 498 GGCCGTTGGGGTTATGGCCGTGGCCATCCACGGAGCGTTTCGTGCTCCCGAAGATCTGTT 557
|| |||||| | |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 AGCAGTTGGGATCATGGGCGTGGCCATCCACGGAGCGTTTCGTGCTCCCGAAGACCTGTT 657
Query 558 TCTTGAAGAACAAGAAGCCATTGGATCAGGCCTTTTCGCATTCTTCAACAACAATGCCTC 617
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 658 TCTTGAAGAACAAGAAGCCATTGGATCTGGACTTTTCGCATTCTTCAACAACAATGCCTC 717
Query 618 TAACGCAGCTGCTGCTGCCATAGCCACCTCCGCAATGTCACGAGTTCGAGCCTGAGATTG 677
||| |||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 718 TAATGCAGCTGCCGCTGCCATAGCCACCTCAGCAATGTCACGCGTTCGAGTCTGAGATTG 777
Query 678 TTGAAGAGACGACATT 693
|||||||||| |||||
Sbjct 778 TTGAAGAGACTACATT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5