BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940175
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07220.1 | Symbols: ATBAG3, BAG3 | BCL-2-associated athanoge... 1583 0.0
> AT5G07220.1 | Symbols: ATBAG3, BAG3 | BCL-2-associated athanogene
3 | chr5:2265256-2266967 REVERSE LENGTH=1448
Length=1448
Score = 1583 bits (857), Expect = 0.0
Identities = 989/1049 (94%), Gaps = 23/1049 (2%)
Strand=Plus/Plus
Query 1 AGAAGAAGCAAAGAATATTTAAAGAATGATGAAAATGAAGACAGGAACATCGCCGCCGGT 60
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||
Sbjct 223 AGAAGAAGCAAAGAATATTTCAAGAATGATGAAGATGAATACAGGAACATCGCCGTCGGT 282
Query 61 CATCGGCGGCGGAAGTAGTGGTAATGAGTGGGAGTCTCGACCTGGAGGAATGGTTGTTCA 120
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CATCGGCGGCGGGACTAGTGGTAATGAGTGGGAGTCTCGACCTGGAGGAATGGTTGTTCA 342
Query 121 ACGTCGGACAGATCAGAACTCCGATGTGCCACGTGTCATTCGTGTTCGGGTTAAATACGG 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 343 ACGTCGGACAGATCAGAACTCCGATGTGCCACGTGTCTTTCGTGTTCGGGTTAAATACGG 402
Query 181 GTCGGTTTATCACGAGATCGACATCAATTCCCAATCTTCCTTCGGAGAGTTGAAGAAGAT 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GTCGGTTTATCACGAGATCAACATCAATTCCCAATCTTCCTTCGGAGAGTTGAAGAAGAT 462
Query 241 GTTGTCTGATCAGGTGGGACTTCACCATGAAGACATGAAGGTTTTGTACAAAGACAAAGA 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GTTGTCTGATCAAGTGGGACTTCACCATGAAGACATGAAGGTTTTGTACAAAGACAAAGA 522
Query 301 AAGAGATTCAAAGATGTTTCTTGATCTTTGTGGAGTTAAAGATCGGTCAAAGCTTGTTGT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAGAGATTCAAAGATGTTTCTTGATCTTTGTGGAGTTAAAGATCGGTCAAAGCTTGTTGT 582
Query 361 TAAAGAAGATCCAATTTCTCAGGAGAAACGTCTCCTTGCAAAAAGGAAAAACGCCGCCAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TAAAGAAGATCCAATTTCTCAGGAGAAACGTCTCCTTGCAAAAAGGAAAAACGCCGCCAT 642
Query 421 TGAAAAAGCTTCTAAATCTATCTCTGATATTAGTTTCGAAGTCGACAGACTCGCTGGTCA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 643 TGAAAAAGCTTCTAAATCTATCTCTGATATTAGTTTCGAAGTCGACAGACTCGCCGGACA 702
Query 481 GGTGTCGGCGTTTGAGACAGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTTGT 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GGTGTCGGCGTTTGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTTGT 762
Query 541 GAATCTGATAGAGATGTTGATGAATCAGCTATTGAGACTTGATGCGATTATTGCTGATGG 600
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 763 GAATCTGATAGAGATGTTGATGAATCAGTTATTGAGACTTGATGCTATTATTGCTGATGG 822
Query 601 TGATGTGAAATTGAAGAGGAAGATGCAGGTGCAAAGAGTTCAGAAGTACGTTGAGGCACT 660
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TGATGTCAAATTGATGAGGAAGATGCAGGTGCAAAGAGTTCAGAAGTACGTTGAGGCACT 882
Query 661 CGACGTCTTGAAAGTCAAAAACTCTACCAAAAAAGTTGAAGTCAACAAGTCGGTCCGCCA 720
|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 883 CGACCTCTTGAAAGTCAAAAACTCTGCCAAAAAAGTTGAAGTCAACAAGTCCGTCCGCCA 942
Query 721 CAAACCGCAAACGCAAACGCGATGTGAGCAACGCGATTTGTTATCATTTGTGGAGGA-G- 778
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 943 CAAACCGCAAACGCAAACGCGATTTGAGCAACGCGATTTGTTATCGTTTGTGGAGGAAGA 1002
Query 779 G-AG------CCTAGGAATTCCAATGCCTCCTCCTCATCAGGTACTCCGGCTGTTGTAAC 831
| || ||||||||||||||||| || |||||||||||||||||||| |||||| |
Sbjct 1003 GGAGGAGGAGCCTAGGAATTCCAATGCATCATCCTCATCAGGTACTCCGGCGGTTGTAGC 1062
Query 832 TACAAAATGGGAGACGTTTGATTCGGC-TA-A-GGC---GGC--C-GAAACGGTTAAACC 882
| |||||||||| | ||||||||| || | | ||| ||| | ||||||||||||||
Sbjct 1063 TTCAAAATGGGAAATGTTTGATTCCGCATCGACGGCCAAGGCGGCTGAAACGGTTAAACC 1122
Query 883 GGTCCCTCCGAGATTCAAATGGGAATTCTTCGATTAAGATAAACACCATA----CATACA 938
|||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 1123 GGTCCCTCCGCGATTCAAATGGGAATTCTTCGATTAAGATGAACACTATATATACATACA 1182
Query 939 TGATAAATAtgttttttattttctccgatttcatatgtgatttgttttgtttttCATCTC 998
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1183 TGATAAATATGTCTTTT-TTTTCTCCGGTTTCATATGTGATTTGTTTTGTTTTTCATCTC 1241
Query 999 AACTGAGGTGTGTATGATTTGTGATTTGA 1027
||||||| |||||||||||||||||||||
Sbjct 1242 AACTGAGATGTGTATGATTTGTGATTTGA 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5