BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940181
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55410.1 | Symbols: | 2-oxoglutarate dehydrogenase, E1 comp... 243 7e-64
> AT3G55410.1 | Symbols: | 2-oxoglutarate dehydrogenase, E1 component
| chr3:20541435-20546034 FORWARD LENGTH=3494
Length=3494
Score = 243 bits (131), Expect = 7e-64
Identities = 193/219 (88%), Gaps = 19/219 (9%)
Strand=Plus/Plus
Query 31 ATGAGCGGAAGAAGGTTGGCGCAAGGGATGTTGCTATTTGTAGAGTGGAGCAGCTTTGTC 90
|||| ||||||||||||||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 2854 ATGAACGGAAGAAGGTTGGCGCAACAGATGTTGCTATCTGTAGAGTTGAACAGCTTTGTC 2913
Query 91 CTTTCCCATATGATCTCATTCAGCGTGAGCTCAAGAGATATCCAA-TGCC-A-A--G--- 142
||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 2914 CTTTCCCATATGATCTCATTCAGCGTGAGCTCAAGAGATATCCAAATGCGGAGATCGTTT 2973
Query 143 ------AAGA-GA--CGATGAACATGGGAGCATTCAGCTACATATCTCCACGGCTATGGA 193
|||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2974 GGTGCCAAGAAGAGGCGATGAACATGGGAGCATTCAGCTACATATCTCCACGGCTATGGA 3033
Query 194 CAGCAATGAGAAGC-TGAAACAGAGGAGATATGGAAGAC 231
|||||||||||||| | ||||||||||||||||||||||
Sbjct 3034 CAGCAATGAGAAGCGT-AAACAGAGGAGATATGGAAGAC 3071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5