BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940182
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07240.1 | Symbols: IQD24 | IQ-domain 24 | chr5:2271919-2274... 1945 0.0
AT5G62070.1 | Symbols: IQD23 | IQ-domain 23 | chr5:24929919-249... 206 6e-52
> AT5G07240.1 | Symbols: IQD24 | IQ-domain 24 | chr5:2271919-2274288
FORWARD LENGTH=1552
Length=1552
Score = 1945 bits (1053), Expect = 0.0
Identities = 1174/1233 (95%), Gaps = 6/1233 (0%)
Strand=Plus/Plus
Query 15 CTAAGTATGGGTTTCTTTGGAAGACTGTTCGGAAGTAAGAAGCAAGAAAAATCAACACCG 74
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 104 CTAAGTATGGGTTTCTTTGGAAGACTGTTCGGAAGTAAGAAGCAAGAAAAGGCAACACCG 163
Query 75 AACAGACGTAGATGGAGTTTCGCTACTAGATCCTCAAATCCGGCGAATGATTCGTCTTCT 134
|||||||| |||||||| |||||||||||||||||| |||| | ||||||||||||||||
Sbjct 164 AACAGACGAAGATGGAGCTTCGCTACTAGATCCTCACATCCCGAGAATGATTCGTCTTCT 223
Query 135 CATCCAAGTAAGAGACGTGGAGATGAAGATGTCTTAGACGCCGACAAGCATGCGGTAGCC 194
||| |||| ||||||||||| ||||||||||||||| ||| ||||||||||||| |||||
Sbjct 224 CATTCAAGCAAGAGACGTGGGGATGAAGATGTCTTAAACGGCGACAAGCATGCGATAGCC 283
Query 195 GTAGCGGCTGCTACAGCTGCGGTGGCTGAAGCCGCGCTCGCTGCTGCTCGTGCGGCGGCG 254
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 284 GTCGCGGCTGCTACAGCTGCAGTGGCTGAAGCCGCACTCGCTGCTGCTCGTGCGGCGGCG 343
Query 255 GAAGTTGTGAGACTAACCAATGGTGGTAGAAACTCGTCGGTAAAACAAATCAGTCGGAGT 314
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GAAGTCGTGAGACTCACCAATGGTGGTAGAAACTCGTCGGTAAAACAAATCAGTCGGAGT 403
Query 315 AATCGTCGGTGGTCTCAAGAGTATAAAGCGGCGATGAAGATTCAATCCGCTTTTCGTGGC 374
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 404 AATCGTCGGTGGTCTCAAGAGTATAAAGCAGCTATGAAGATTCAATCCGCTTTTCGTGGC 463
Query 375 TACTTGGCGAGGAGGGCTTTAAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTAGTG 434
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 464 TACTTGGCGAGGAGGGCGTTGAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTGGTG 523
Query 435 AAGGGACACATTGTAAGGAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTT 494
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AAGGGACACATAGTAAGGAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTT 583
Query 495 CGGCTCCAAGCACGAGCTCGAGCTTCACGTTCTTCTCACGTTTCTGACTCTTCCCACTC- 553
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 584 CGGCTCCAAGCACGAGCTAGAGCTTCGCGTTCTTCTCACGTTTCTGACTCTTCCCA-TCC 642
Query 554 GCCAACACTAATGATTCCATCTTCCCCACAATCTTTCCATGCACGATGCGTTTCAGAGGC 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GCCAACACTAATGATTCCATCTTCCCCACAATCTTTCCATGCACGATGCGTTTCAGAGGC 702
Query 614 TGAGTACAGCAAAGTCATTGCCATGGATCACCACAACAACAACCATCGTTCACCGATGGG 673
||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 703 TGAGTACAGTAAAGTCATTGCCATGGATCACCACCACAACAACCACCGTTCACCGATGGG 762
Query 674 TTCGAGCCGGTTATTAGACCAATGGAGGACAGAGGAAAGTCTATGGAACGCACCACAGTA 733
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 763 TTCAAGCCGGTTATTAGACCAATGGAGGACAGAGGAAAGTCTATGGAGCGCACCAAAGTA 822
Query 734 CAATGAAGATAATGACAAGATCCTAGAAGTCGACACTTGGAAGCCTCACTTCAGAGAGTC 793
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CAATGAAGATGATGACAAAATCCTAGAAGTCGACACTTGGAAGCCTCACTTCAGAGAGTC 882
Query 794 ACCAAGGAAAAGAGGATCACTTA-TGGTTCCGACAAGCGTGGAGAACAGTCCACAATTAA 852
|||||||||||||||||| || | ||||||| ||||| ||||||||||||||||||||||
Sbjct 883 ACCAAGGAAAAGAGGATCTCT-AGTGGTTCCTACAAGTGTGGAGAACAGTCCACAATTAA 941
Query 853 GGTCTAGAACAGGAAGTAGCAGTGGTGGTTCAAGGAGAAAAACTCCCTTCACGCCTACGA 912
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 942 GGTCTAGAACAGGAAGCAGCAGTGGTGGTTCAAGGAGAAAAACTCCCTTCACGCCTGCGA 1001
Query 913 GAAGCGAGTACGAGTACTACTCCGGGTATCACCCTAACTACATGGCTAACACTGAGTCTT 972
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1002 GAAGCGAGTACGAGTACTACTCTGGGTATCACCCTAACTACATGGCTAACACTGAGTCTT 1061
Query 973 ACAGAGCAAAAGTCCGGTCACAAAGCGCACCAAGACAGAGGCTACAAGATTTATCTTCAG 1032
||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1062 ACAAAGCAAAAGTCCGATCACAAAGCGCACCAAGACAGAGACTACAAGATTTACCTTCAG 1121
Query 1033 AGAGTGGCTACAAGAGGTCTATACAGGGACAGTATTACTACTACACACCGGCTGCAGAGC 1092
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1122 AGAGTGGTTACAAGAGGTCTATACAGGGACAGTATTACTACTACACGCCTGCTGCAGAGC 1181
Query 1093 GATCGTTTGATCAGCGTTCGGATAACGGTATCGCCGGTTACAGAGGAGTGTCTGATGGGT 1152
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1182 GATCGTTTGATCAGCGTTCGGATAACGGGATCGCGGGTTACAGAGGAGTTTCTGATGGGT 1241
Query 1153 TAGATCGAAACCAAAGTGAGAAATCGAAGATTTATACTTCGTTTTTCAGTTCTAATCCTC 1212
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1242 TAGATCGAAACCAAAGTGACAAATCGAAGATGTACACTTCGTTTTTCAGTTCTAATCCTC 1301
Query 1213 TTTTCTTTCAATAGTCGA-AA-GGATGaaaaaa 1243
|||||||||||||||||| || |||||||||||
Sbjct 1302 TTTTCTTTCAATAGTCGAGAAAGGATGAAAAAA 1334
> AT5G62070.1 | Symbols: IQD23 | IQ-domain 23 | chr5:24929919-24932576
REVERSE LENGTH=1475
Length=1475
Score = 206 bits (111), Expect = 6e-52
Identities = 233/290 (80%), Gaps = 16/290 (6%)
Strand=Plus/Plus
Query 275 TGGTGGTAGAAACTCGTCGGTAAAACAAATCA-GTCGGAGTAATCGTCGGTGGTCTCAAG 333
||| ||| ||||||||||||| ||||| | | | ||||| ||||||||| |||| |
Sbjct 413 TGGCGGTGGAAACTCGTCGGTGTTTCAAAT-AGGAAGAAGTAACCGTCGGTGGGCTCAGG 471
Query 334 AGTATAAAGCGGCGATGAAGATTCAATCCGCTTTTCGTGGCTA-CTTGGCGAGGAGGGCT 392
|| ||| |||||||||||||||||||||||||||||||| || || ||||||||| ||
Sbjct 472 AGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCT-GGCGAGGAGAGCA 530
Query 393 TTAAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTAGTGA-AGGGACACATTGTAAG 451
||| ||||||| ||||||||||||||||||||||| ||||||| ||| |||||| || ||
Sbjct 531 TTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGG-ACACATAGTGAG 589
Query 452 GAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTTCGGCT-C---C--AAGC 505
|||||||| || |||||||| | | ||||| || || ||||| || | | ||||
Sbjct 590 AAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTTGTTCGTCTTCAATCTCAAGC 649
Query 506 ACGAGCTCGAGCTTCACGTTCTTCTCACGTT-TCTGACT-CTTCCCACTC 553
|| |||||||| || |||||||||||| | |||| || ||| ||||||
Sbjct 650 TCGTGCTCGAGCCTCTCGTTCTTCTCAC-TCCTCTG-CTTCTTTCCACTC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5