BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940204
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07450.1 | Symbols: CYCP4;3 | cyclin p4;3 | chr5:2358352-235... 1029 0.0
> AT5G07450.1 | Symbols: CYCP4;3 | cyclin p4;3 | chr5:2358352-2359308
REVERSE LENGTH=772
Length=772
Score = 1029 bits (557), Expect = 0.0
Identities = 657/704 (93%), Gaps = 12/704 (2%)
Strand=Plus/Plus
Query 1 CACATCTCCCTCCAAATCCAATGGCTTATCAGATTGATCAGAAGGTGATTCACGATCAAG 60
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 36 CACATCTCTCTCTAAATCCAATGGCTTATCAGATTGATCAGAAGATGATTCACGATCAAG 95
Query 61 AACCAATGGCTGAGATCATGCCAAATGTCATAACGGCGATTTCATCTCTCCTACAAAGGG 120
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 96 AACCAATGGCTGAGATCATGCCAAATGTCATAACGGCGATGTCATCTCTTCTACAAAGGG 155
Query 121 TGTCGGAGACGAACGACGATCTGAGCCGTCCGTTCAGGGAGCACCAGAGGATCTCAGCTT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 156 TGTCGGAGACGAACGACGATCTGAGCCGTCCGTTCAGGGAGCACAAGAGGATCTCAGCTT 215
Query 181 TCAATGCACTGGCCAAACCTTCTATATCAATCAGAAGCTATATGGAGAGGATCTTCAAGT 240
|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 216 TCAATGCAGTGACCAAACCTTCTATATCAATCAGAAGCTATATGGAGAGGATATTCAAGT 275
Query 241 ACGCAGATTGTAGCGACTCGTGTTACATAGTTGCGTATATATATTTGGATCGGTTCATAC 300
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 276 ACGCAGATTGCAGCGACTCGTGTTACATAGTCGCGTATATATATTTGGATCGGTTCATAC 335
Query 301 AAAAGCAGCCATTTTTGCCCATTGATTCCTTTAATGTCCATAGGCTCATTATCACCAGCG 360
||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 336 AAAAGCAGCCATTGTTGCCCATTGATTCCTCTAATGTCCATAGACTCATCATCACCAGCG 395
Query 361 TCTTGGTCTCTGCTAAGTTCATGGATGACTTGTGTTACAATAATGCATTTTATGCGAAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 396 TCTTGGTCTCTGCTAAGTTCATGGATGACTTGTGTTACAATAATGCATTCTATGCGAAAG 455
Query 421 TTGGAGGAATAACCACAGAGGAGATGAACTTGTTAGAGCTGGACTTCTTATTTGGAATTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTGGAGGAATAACCACAGAGGAGATGAACTTGTTAGAGCTGGACTTCTTATTTGGAATTG 515
Query 481 GATTCCAATTGAATGTGACAGTTTCTAGTTACAACGACTATTGTTCTTCACTACAAAGAG 540
|||||||||||||||||||| |||||| ||| || ||||||||||||||||| |||||||
Sbjct 516 GATTCCAATTGAATGTGACAATTTCTACTTATAATGACTATTGTTCTTCACTTCAAAGAG 575
Query 541 AGATGGTTATGAGGACCATGTACTCTCCACTTTTGGAACCTTCTTTTTTAGTTAAAAGTT 600
|||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct 576 AGATGGTTATGAGGACGATGTACTCTCCACTTTTGGAACCTGCTTTTTTAGTTAGAAGTT 635
Query 601 TTCATAAGAATCTTCTGATGCATTTGTTCGACGAAGGTTCACTATCTATCCATCGAAATA 660
|||||||||||||||| | | |||||| |||||||| | | | ||| | || ||
Sbjct 636 TTCATAAGAATCTTCTAAAGAATTTGTACGACGAAG----A-T--C-ATCG-T--AA-TA 683
Query 661 ATCAAGTCACCACTGCTGTTTGATACGTTAGATTATTAGATCAT 704
||||||||||| ||||||||||||| || || || ||||||||
Sbjct 684 GTCAAGTCACCAGTGCTGTTTGATACATTGGAATACTAGATCAT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5