BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940206
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07470.1 | Symbols: PMSR3, ATMSRA3 | peptidemethionine sulfo... 946 0.0
AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfo... 529 1e-149
> AT5G07470.1 | Symbols: PMSR3, ATMSRA3 | peptidemethionine sulfoxide
reductase 3 | chr5:2362570-2364374 REVERSE LENGTH=887
Length=887
Score = 946 bits (512), Expect = 0.0
Identities = 606/652 (93%), Gaps = 3/652 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCTAGAAATTTCTCAATGAACATACTCAACAGGTTGGGTTTGGGATCAAGTGGG 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 68 TCTCTCTTTAGAAATTTCTCAATGAACATACTCAACAGATTGGGTTTGGGATCAAGTGGG 127
Query 61 CAAAACAATATGGATCCATCTCCGATCGCTCAGGGTAACGACGGTGACGCTCCGTCACCG 120
|||| |||||||||||| ||||||||||||||||| || |||| |||| | ||| | |||
Sbjct 128 CAAACCAATATGGATCCTTCTCCGATCGCTCAGGGAAATGACGATGACACACCGGCGCCG 187
Query 121 GGGAATCAGTTTGCTCAATTCGGCGCTGGATGCTTCTGGGGTGTTGAGCTGGCGTTTCAG 180
|||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 188 GGGAATCAGTTTGCCCAATTCGGAGCTGGATGTTTCTGGGGTGTCGAGCTGGCGTTTCAG 247
Query 181 AGAGTCCCAGGTGTGACTCAGACCGAGGTTGGATATACACAAGGGATCGTAGACAATCCT 240
||||||||||| |||||||||||||||| |||||| || ||||||| |||||||||||||
Sbjct 248 AGAGTCCCAGGGGTGACTCAGACCGAGGCTGGATACACCCAAGGGACCGTAGACAATCCT 307
Query 241 TCATACGAAGATGTTTGTTCTGGCACCACGA-GCCATGCGGAGGTTGTTAGGGTTCAATA 299
||||||| ||||||||||||||| ||||| | ||||| ||||||||||||||||||||||
Sbjct 308 TCATACGGAGATGTTTGTTCTGGTACCAC-AGGCCATTCGGAGGTTGTTAGGGTTCAATA 366
Query 300 TGATCTCAATGATTGCAGCTATGAATCTCTGCTTGATTTGTTCTGGTCTAGGCATGATCC 359
|||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 367 TGATCTTAACGATTGCACCTATGAGTCTCTGCTTGATTTGTTCTGGTCTAGGCATGATCC 426
Query 360 CACCACTTTGAATCGACAGGGAAATGATGTGGGAACCCAATACCGATCTGGAATATACTT 419
||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 427 CACCACTTTGAATCGCCAGGGAAATGACGTGGGAACCCAATACAGATCTGGAATATACTT 486
Query 420 CTACACACCCGAGCAGGAGAAACTGGCCCGTGAGTCACTTGAACGTCACCAGCAACAAAT 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 487 CTACACACCCGAGCAGGAGAAACTAGCCCGTGAGTCACTTGAACGTCACCAGCAACAAAT 546
Query 480 GGAAAGGAAGATCATGACTGAGATCTTGCCAGCTAAGAAATTCTATAGAGCTGAAGAGCA 539
||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 547 GGAGAGAAAGATCATGACTGAAATCTTGCCAGCTAAGAAATTCTACAGAGCTGAAGAGCA 606
Query 540 TCATCAACAGTACCTGTCAAAGGGTGGGCGGTTCGGCCTCGGGCAATCCACTGCCAAAGG 599
|||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 607 TCATCAACAGTATCTGTCAAAAGGTGGGCGGTTTGGCCAAGGGCAATCCACTGCCAAAGG 666
Query 600 CTGCAACGACCCAATCCGCTGCTACGGCTAAAAAGCTCCTTTCCTCTGCTCC 651
||||||||||||||||||||| ||||||||| ||||| |||||||||| |||
Sbjct 667 CTGCAACGACCCAATCCGCTGTTACGGCTAATAAGCTGCTTTCCTCTG-TCC 717
> AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfoxide
reductase 1 | chr5:24775035-24776390 FORWARD LENGTH=924
Length=924
Score = 529 bits (286), Expect = 1e-149
Identities = 522/637 (82%), Gaps = 11/637 (2%)
Strand=Plus/Plus
Query 2 CTCTCTCTA-GAAATTTCTCAATGAACATACTCAACAGGTTGGGTTTGGGATCAAGTGGG 60
||||||||| ||||||||| ||||||||||| |||| | | ||| | ||||||||| |
Sbjct 52 CTCTCTCTACAAAATTTCTCCATGAACATACTTAACAAGCTAGGTATAGGATCAAGTAGA 111
Query 61 CAAAACAATATGGATCCATCTCCGATCGCTCAGGGTAA-CGACGGTGACGCTCCGTCACC 119
|||| ||| |||||||| ||||| ||||| || |||| ||||| || |||||| | ||
Sbjct 112 CAAACCAACATGGATCCTTCTCCAATCGCACA-AGTAATCGACGACGAAGCTCCGGCGCC 170
Query 120 GGGGAATCAGTTTGCTCAATTCGGCGCTGGATGCTTCTGGGGTGTTGAGCTGGCGTTTCA 179
||| || |||||| ||||||||||||| || || |||||| | || || | |||| ||
Sbjct 171 GGGAAACCAGTTTACTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGAATTAGCGTACCA 230
Query 180 GAGAGTCCCAGGTGTGACTCAGACCGAGGTTGGATATACACAAGGGATC-GTAGACAATC 238
|||||| ||||| |||||||| || |||||||| ||| | ||||||||| | || |||
Sbjct 231 GAGAGTTCCAGGAGTGACTCAAACAGAGGTTGGTTATTCTCAAGGGATCACT-CACGATC 289
Query 239 CTTCATACGAAGATGTTTGTTCTGGCACCACGAGCCATGCGGAGGTTGTTAGGGTTCAAT 298
|||| ||| ||||||||||||| || ||||||| ||||| ||| ||||| | |||||||
Sbjct 290 CTTCTTACAAAGATGTTTGTTCAGGTACCACGAATCATGCCGAGATTGTTCGTGTTCAAT 349
Query 299 ATGATCTC-AATGATTGCAGCTATGAATCTCTGCTTGATTTGTTCTGGTCTAGGCATGAT 357
|||||| | || || || || || | || |||||||||||||||||||||| |||||||
Sbjct 350 ATGATC-CAAAAGAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGAT 408
Query 358 CCCACCACTTTGAATCGACAGGGAAATGATGTGGGAACCCAATACCGATCTGGAATATAC 417
||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 409 CCCACCACTTTGAATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATAT 468
Query 418 TTCTACACACCC-GAGCAGGAGAAACTGGCCCGTGAGTCACTTGAACGTCACCAGCAACA 476
||||||| |||| ||||| |||||||| || || |||||||| || || |||||||||||
Sbjct 469 TTCTACA-ACCCGGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCGGCACCAGCAACA 527
Query 477 AATGGAAAGGAAGATCATGACTGAGATCTTGCCAGCTAAGAAATTCTATAGAGCTGAAGA 536
| | || |||||| | |||| |||||||| || ||||||||||| ||||||||||| ||
Sbjct 528 AGTTGACAGGAAGGTTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGA 587
Query 537 GCATCATCAACAGTACCTGTC-AAAGGGTGGGCGGTTCGGCCTCGGGCAATCCACTGCCA 595
||||| || || ||| |||| ||| || ||| |||| || || |||||| || | |
Sbjct 588 ACATCACCAGCAATACTTGTCTAAA-GGAGGGAGGTTTGGTCTTAAGCAATCAACGGAAA 646
Query 596 AAGGCTGCAACGACCCAATCCGCTGCTACGGCTAAAA 632
||||||||||||||||||||||||||||||| |||||
Sbjct 647 AAGGCTGCAACGACCCAATCCGCTGCTACGGGTAAAA 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5