BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940208

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07480.1 | Symbols: KUOX1 | KAR-UP oxidoreductase 1 | chr5:2...   283    4e-76


> AT5G07480.1 | Symbols: KUOX1 | KAR-UP oxidoreductase 1 | chr5:2367167-2369554 
FORWARD LENGTH=1023
Length=1023

 Score =  283 bits (153),  Expect = 4e-76
 Identities = 169/177 (95%), Gaps = 0/177 (0%)
 Strand=Plus/Plus

Query  1     GCGAGCTTGCATAGCTTGGGTATGGACGATAAGATGAGTGTCCCGTGTGAATTGGCTAAC  60
             ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||
Sbjct  847   GCGAGCTTGCATAGCTTGGGTATGGACGATAAGATGAGTGTACCGCGCGAATTGGTTAAC  906

Query  61    GATGAAAATCTGGTTCGGTATAAAGAGAGCAGCTTTAACGATTTTCTTGATTTTCTTGTC  120
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  907   GATGAAAATCCGGTTCGGTATAAAGAGAGCAGCTTTAACGATTTTCTTGATTTTCTTGTC  966

Query  121   AAGAATGACATTTCTCAAGGGGATAGGTTCATTGACACTCTTAGAATCAAGGACTGA  177
             || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  967   AAAAATGACATTTCTCAAGGGGATAGGTTTATTGACACTCTCAGAATCAAGGACTGA  1023



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8752435074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5