BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940211
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07510.1 | Symbols: GRP14, ATGRP14, GRP-4, ATGRP-4 | glycine... 525 2e-148
AT5G07520.1 | Symbols: GRP18, ATGRP18, ATGRP-8 | glycine-rich p... 335 4e-91
> AT5G07510.1 | Symbols: GRP14, ATGRP14, GRP-4, ATGRP-4 | glycine-rich
protein 14 | chr5:2377710-2378829 REVERSE LENGTH=796
Length=796
Score = 525 bits (284), Expect = 2e-148
Identities = 331/354 (94%), Gaps = 2/354 (1%)
Strand=Plus/Plus
Query 1 AATTTAACATTTCTCCCAATATGTTTTCTTTTCTCATCATCCTAGTGTCGGAGGTTTCTC 60
|||||||||| | |||||| |||||||||||||||||| ||| |||||||||||||| ||
Sbjct 47 AATTTAACATCTATCCCAAAATGTTTTCTTTTCTCATCCTCCAAGTGTCGGAGGTTTTTC 106
Query 61 AGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACACTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 AGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACACTGG 166
Query 121 CAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATACTCAGTCCTATTC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 167 CAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCGATTC 226
Query 181 TCGTACCAGCCACGATAGCCACTGCTGTCATAACTACAGGATTCACCGCCGGTGGCGCAC 240
|||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 227 TCGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGACTCACCGCTGGTGGCGCAC 286
Query 241 TCGGAACGATGGCCGTTGCTAGTCTCATCAGCATGCGACgtaggtttggag-gtaggaga 299
||||||||||||||| ||| |||| ||||| ||||||||||||| || | ||||||||
Sbjct 287 TCGGAACGATGGCCGCCGCTTCTCTCCTCAGCCTGCGACGTAGGTTCGG-GCGTAGGAGA 345
Query 300 tttgggggaggtaggaggtttgggggaggtaggagatttgggggaagatttgga 353
||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 346 TTTGGGGGACTTAGGAGATTTGGGGGAGGTAGGAGATTTGGGGGAAGATTTGGA 399
Score = 206 bits (111), Expect = 3e-52
Identities = 153/172 (89%), Gaps = 8/172 (5%)
Strand=Plus/Plus
Query 506 AGGTGGAGGTATACCTGGAGGACTTGGAGGGCTT-GGAGGGGGTGGAAATCCGTTTG-GA 563
|||||||||| ||||||||||||||||| || || ||||| || | ||||||||| | |
Sbjct 459 AGGTGGAGGTTTACCTGGAGGACTTGGA-GGATTAGGAGGAGGCGAAAATCCGTTAGCTA 517
Query 564 AACATCTC-AAAATGGCTT-GGACCAGGGGCCGCAGGGGCCGCAGGTGGAGATGCACCTG 621
|| ||||| ||||| | || ||||||||||| |||||||||||| ||||||||||||||
Sbjct 518 AA-ATCTCAAAAAT-G-TTCGGACCAGGGGCTGCAGGGGCCGCAAGTGGAGATGCACCTC 574
Query 622 CCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGCTGCACC 673
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 575 CCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGCTGAACC 626
Score = 106 bits (57), Expect = 3e-22
Identities = 92/108 (85%), Gaps = 6/108 (6%)
Strand=Plus/Plus
Query 644 TGGAGCTGCACCAGCCGCTGGAGCTGCACCTGCCGCTGGAGCTGAACCGGCTGCTGGTG- 702
||||| |||||| |||||| | ||||||||||||||||||||| ||| || ||||| |
Sbjct 561 TGGAGATGCACCTCCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGC 620
Query 703 -GAA--G--TACACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTT 745
||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 621 TGAACCGGCTGCACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTT 668
Score = 80.5 bits (43), Expect = 2e-14
Identities = 86/104 (83%), Gaps = 13/104 (13%)
Strand=Plus/Plus
Query 407 AGGTGGAGGTTTACCTGGAGGACTTGGAGGACTTGGAGGACTTGGAGGGGGCGAGAATCC 466
||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||
Sbjct 459 AGGTGGAGGTTTACCTGGAGGACTTGGAGGA-TT--AGGA---GGAGG---CGAAAATCC 509
Query 467 GTTTGG-AAACATCTCAAAA-TGGTTAGGACCAGGGGCCGCAGG 508
||| | ||| ||||||||| || || ||||||||||| |||||
Sbjct 510 GTTAGCTAAA-ATCTCAAAAATG-TTCGGACCAGGGGCTGCAGG 551
> AT5G07520.1 | Symbols: GRP18, ATGRP18, ATGRP-8 | glycine-rich
protein 18 | chr5:2379924-2381317 REVERSE LENGTH=1058
Length=1058
Score = 335 bits (181), Expect = 4e-91
Identities = 245/274 (89%), Gaps = 12/274 (4%)
Strand=Plus/Plus
Query 3 TTTAACATTT--C--TCCCAATATGTTTTCTTTTCTCATCATCCTAGTGTCGGAGG-TTT 57
|||||||||| | || |||||||||||||||||| ||| | || ||| ||||| |||
Sbjct 66 TTTAACATTTAACTATCACAATATGTTTTCTTTTCTTATC-TTCT--TGTTGGAGGCTTT 122
Query 58 CTCAGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACAC 117
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 123 -TCAGGTGGTTATTGCTACCGTGGTCTCCATAGTCTTCTTAGTGTTCGCGGGTCTAACAC 181
Query 118 TGGCAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATACTCAGTCCTA 177
||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
Sbjct 182 TGGTAGGTTCAGCCACGGCATTAACCATAACAACACCGCTTTTTATTATATTCAGTCCGA 241
Query 178 TTCTCGTACCAGCCACGATAGCCACTGCTGTCATAACTACAGGATTCACCGCCGGTGGCG 237
|||| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 242 TTCTTGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACGGGTGGCG 301
Query 238 CACTCGGAACGATGGCCGTTGCTAGTCTCATCAG 271
|||||||| |||||||||||||| ||||||||
Sbjct 302 CACTCGGAGCGATGGCCGTTGCT---CTCATCAG 332
Score = 228 bits (123), Expect = 7e-59
Identities = 218/260 (84%), Gaps = 22/260 (8%)
Strand=Plus/Plus
Query 452 AGGGGG-CGAGAATCCGTTTGGAAACATCTCAAAATGGTTAGGACCAGGGGCCGCAGGTG 510
|||||| || |||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 465 AGGGGGTGGA-AATCCGTTTGGAGACATCTCAAAATGGCTCGGACCAGGGGCCGCAGGTG 523
Query 511 GAGGTATACCTGGAGGACTTGGAGGGCTTGGAGGGGGTGGAAATCCGTTTGGAAACATCT 570
||||| |||||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 524 GAGGTGCACCTGGAGGA-TT--A------GGAGGGGGCGGAAATCCGTTTGGAAACATCT 574
Query 571 CAAAATGGCTT-GGACCAGGGGCCGCAGG-GGCC--GCA---G--G-TGGAGATGCACCT 620
|||||||| || ||||||||||||||||| || ||| | | ||| | |||||||
Sbjct 575 CAAAATGG-TTCGGACCAGGGGCCGCAGGTGGAGATGCATCTGCTGCTGGTGGTGCACCT 633
Query 621 GCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGCTGCACCTGCCGCT 680
||||||||| ||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 634 GCCGCTGAAGCTGCACCAGCCGCTGGAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCT 693
Query 681 GGAGCTGAACCGGCTGCTGG 700
||||||| || || |||||
Sbjct 694 GGAGCTGCGCCTGCCGCTGG 713
Score = 183 bits (99), Expect = 2e-45
Identities = 125/138 (91%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 608 TGGAGATGCACCTGCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGC 667
||||| ||| |||||||||| | |||| ||||||||||||||||| || |||||||||||
Sbjct 657 TGGAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCTGGAGC 716
Query 668 TGCACCTGCCGCTGGAGCTGAACCGGCTGCTGGTGGAAGTACACCACCCACATGGTAAAG 727
||| ||||| |||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 717 TGCGCCTGCTGCTGGAGCTGCTCCTGCCGCTGGTGGAAGTACACCACCCACATGGTAAAG 776
Query 728 GAAATAAGTCAAGTTGTT 745
||||||||||||||||||
Sbjct 777 GAAATAAGTCAAGTTGTT 794
Score = 121 bits (65), Expect = 1e-26
Identities = 126/152 (83%), Gaps = 18/152 (12%)
Strand=Plus/Plus
Query 362 AAATCCGTTTGGAAATATCTCAAAATGGTTAGGACCAGGGGCCGCAGGTGGAGGTTTACC 421
||||||||||||| | |||||||||||| | |||||||||||||||||||||||
Sbjct 474 AAATCCGTTTGGAGACATCTCAAAATGGCTCGGACCAGGGGCCGCAGGTGGAGG------ 527
Query 422 TGGAGGACTTGGAGGACTTGGAGGACTTGGAGGGGGCGAGAATCCGTTTGGAAACATCTC 481
| | || ||||||| || |||| || ||| | || ||||||||||||||||||||
Sbjct 528 T---GCACCTGGAGGA-TT--AGGA---GG-GGGCG-GA-AATCCGTTTGGAAACATCTC 575
Query 482 AAAATGGTTAGGACCAGGGGCCGCAGGTGGAG 513
||||||||| ||||||||||||||||||||||
Sbjct 576 AAAATGGTTCGGACCAGGGGCCGCAGGTGGAG 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5