BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940212

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12400.2 | Symbols: Hop3 | stress-inducible protein, putativ...   315    2e-85


> AT4G12400.2 | Symbols: Hop3 | stress-inducible protein, putative 
| chr4:7338659-7341361 REVERSE LENGTH=2006
Length=2006

 Score =  315 bits (170),  Expect = 2e-85
 Identities = 193/204 (95%), Gaps = 1/204 (0%)
 Strand=Plus/Minus

Query  121  CATCAGCTAATCCAGATTTAAGCGTCTCGTTACTCGGATCAATCTCTAATCCTTTCTTAT  180
            ||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct  459  CATCAGCTAATCCCGATTTAAGCATCTCATTACTCGGATCAATCTCTAATCCTTTCTTAT  400

Query  181  ATGCATCAATCGCTTCTTCAAACTTAGACAATCCAATAAACGCAGCTCCTAATCGGCTAT  240
            | | ||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct  399  ACGAATCAACCGCTTCATCAAACTTGGACAATCCAATAAACGCAGCACCTAATCGGCTAT  340

Query  241  ATCCTTTAGACCAATCAGGTTTAAGCTCTATAGTCTTCTTCGCGTCGGATAAAGCTTCTT  300
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  339  ATCCTTTAGACCAATCAGGTTTAAGCTCTATAGTCTTCTTCGCGTCTGATAAAGCTTCTT  280

Query  301  CGTAACGGTGGAGAGAA-CGTAAG  323
            ||||||||||||||||| ||||||
Sbjct  279  CGTAACGGTGGAGAGAAGCGTAAG  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15130592449


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5