BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940214
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07530.1 | Symbols: GRP17, ATGRP17, ATGRP-7 | glycine rich p... 1157 0.0
> AT5G07530.1 | Symbols: GRP17, ATGRP17, ATGRP-7 | glycine rich
protein 17 | chr5:2382468-2384521 REVERSE LENGTH=1868
Length=1868
Score = 1157 bits (626), Expect = 0.0
Identities = 997/1163 (86%), Gaps = 77/1163 (7%)
Strand=Plus/Plus
Query 1 CAACAATCCGATCAGAAAATATGAGCGAAGAACTCAGTCAAAACCCATCATCAGCTCAGT 60
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 7 CAACAATCCGATCAGAAAATATGAGCGAAGAACTAAGTCAAAAGCCATCATCAGCTCAGT 66
Query 61 CTCTGTCACTGAGAGAGGACAAAAATCGATTTCCTTTTCTGTCTTTGTCACAGAGAGAGG 120
|||||||||||||||||| || |||| | |||||||||||||| |||||||||||||||
Sbjct 67 CTCTGTCACTGAGAGAGGGCAGAAATAGGTTTCCTTTTCTGTCCCTGTCACAGAGAGAGG 126
Query 121 GCAGATTTTTTCCTTCGT-TGTCTCTGTCAGAGAGAGAGGGAAGAAAGTTTTCTTTTCTC 179
|||||||||||||||| | | ||||| ||||||||||| |||||||||||||||||||||
Sbjct 127 GCAGATTTTTTCCTTC-TCTATCTCTTTCAGAGAGAGATGGAAGAAAGTTTTCTTTTCTC 185
Query 180 AGTATGTTCTCTTTTCTCATGCCATTGTTGGAGGTTATTAAGATTATTATTGCTTCCGTG 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 186 AGTATGTTCTCTTTTCTCATGCCACTGTTGGAGGTTATTAAGATTATTATTGCTTCTGTG 245
Query 240 GCCTCCGTAGTCTTCTTAGGCTTCGCATGTGTAACCCTCGCTGGTTCTGCCGTGGCATTA 299
||||||||| ||||| | || ||||| ||||||||||||||||||||||||| ||||||
Sbjct 246 GCCTCCGTAATCTTCGTCGGTTTCGCCTGTGTAACCCTCGCTGGTTCTGCCGCAGCATTA 305
Query 300 GCCGTAAGCACACCGGTTTTCATCATATTTAGTCCCGTTCTCGTACCAGCTACGATAGCC 359
| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 306 GTCGTAAGCACCCCGGTTTTCATCATATTTAGTCCTGTTCTCGTACCAGCTACGATAGCC 365
Query 360 ACGGTTGTCTTGACGACAGGGTTCACGGCCGGTGGCTCCTTTGGAGCGACGGCCCTTGGT 419
|||||||||||| ||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct 366 ACGGTTGTCTTGGCGACAGGATTCACGGCCGGTGGCTCTTTTGGAGCGACAGCACTTGGT 425
Query 420 CTCATCTTGTGGCTTATTAAACGTAGGATGGGAGTAAAGGCGAAGGATAATCCACCTCCG 479
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 CTCATCATGTGGCTTGTTAAACGTAGGATGGGAGTAAAGCCGAAGGATAATCCACCTCCG 485
Query 480 GCCGGACTTCCACCGAATTCGGGAGC-GGAAGCAGGAGGAGCCCAAAGTCTGATCAAAAA 538
|| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 486 GCAGGACTTCCACCGAATTCGGGAGCAGGA-GCAGGAGGAGCTCAAAGTCTGATCAAAAA 544
Query 539 GTCAAAG------TCTAAAGGTGGGCTAAAGCTGCCAGCATGGTGTAAGAAGATGTTAGG 592
||||||| |||||||||||||| ||| || ||||||||||||||||||
Sbjct 545 GTCAAAGGCAAAGTCTAAAGGTGGGCTTAAG--GCT----TGGTGTAAGAAGATGTTAAA 598
Query 593 AGGTAAATTCGGTGGTAAAAAAGGTAAGTCAGGGGGTGGAAAAGGTAAATTTGGAGGTAA 652
| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 599 AAGTAAATTCGGTGGTAAAAAAGGCAAGTCCGGGGGTGGAAAAAGTAAATTTGGAGGTAA 658
Query 653 AGGCGGTATGTCCGAAGGTGAAGAAGGTATGTCGTCTGGGGATGAAGGTATGTCCGGGGG 712
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 659 AGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTCGTCTGGGGATGAAGGTATGTCTGGAAG 718
Query 713 TGAAGGAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGA---GG-A------- 761
||||||||||| ||| | ||| |||| |||||| |||| || || |
Sbjct 719 TGAAGGAGGTATGTCCGGAGGTGAAGGAGGTAAATCCAAAAGTGGAAAAGGTAAACTCAA 778
Query 762 -GCTAAA-TCaaaaagtaaaaaaGGTATGTCCGGAGGGTCCGAGAGTGAAGAAGGTATGT 819
|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCTAAACTCGAAAAG-AAAAAAGGTATGTCCGGAGGGTCCGAGAGTGAAGAAGGTATGT 837
Query 820 CTGGAAGTGAAGGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGGGGAGGAGGTA 879
|||||||||||||||||||||| || ||||||||| ||||||||||||| | | |
Sbjct 838 CTGGAAGTGAAGGAGGTATGTCTGGTGGTGGAGGAAGTAAATCCAAAAGTA-A--A---A 891
Query 880 AAAGCGGAGGTCTTCGAGG-TAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTGGCGGA 938
|||| | || | | | |||||| ||||||||| ||||||||||||||| | |
Sbjct 892 AAAGTAAA---CT-CAAAGCTAAATTGGGAAAGAAAAAAGGTATGTCCGGAGG---C--A 942
Query 939 GGCATGTCAGGAAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCC-G-G----A 992
||||||||||||||| || |||||||||||||||||||||||||||| | | |
Sbjct 943 ----TGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCAGTGGTGGA 998
Query 993 GG---TAAATCCAAAAGTAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAATACGGAAAG 1049
|| |||||||||||||| | | |||||||| || || | || | ||||||
Sbjct 999 GGAAGTAAATCCAAAAGTAAAAAAAGTAAACTCAAAG--CT---A---AATTG-GGAAAG 1049
Query 1050 AAAGGTGGTAAGTTCGGTGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGAA 1109
||| |||| || | |||||||||||||||||||||| ||||||||||| |
Sbjct 1050 AAAAA----AAGTA---TG-TCC-GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGA 1100
Query 1110 AGTGAaggaggtatgtccgaagg 1132
||||||||||||||||||| |||
Sbjct 1101 AGTGAAGGAGGTATGTCCGGAGG 1123
Score = 507 bits (274), Expect = 2e-142
Identities = 401/458 (88%), Gaps = 26/458 (6%)
Strand=Plus/Plus
Query 1160 aggaggtatgtccggaggaggtatgtccggaggtggaggaggtaAACAC--AA-TGGAAA 1216
||||||||| |||||||| |||||||| || || | ||| |||||||| || ||||
Sbjct 1235 AGGAGGTATATCCGGAGGTGGTATGTCTGGGGGCAGTGGAAGTAAACACAAAATTGGAGG 1294
Query 1217 AGGTAAACACGGAGGTCTTGGAGGTAAATTCGGAAAGAAAGGAGGCATGT-CTGAACGTG 1275
|||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||
Sbjct 1295 AGGTAAACACGGAGGTCTTGGAGGTAAATTCGGAAAGAAAAGAGGCATGTCCGGAA-GTG 1353
Query 1276 GAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAG 1335
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1354 GAGGAGGCATGTCAGGAAGTGAAGGAGGTGTGTCTGGAAGTGAAGGAAGTATGTCCGGAG 1413
Query 1336 GTGGTATATCTGGGGGTGGAGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTC 1395
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 GTGGTATGTCTGGGGGTAGCGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTC 1473
Query 1396 TTGGAAGTAAATTCGGGAAGAAAGGAGGCATGTCCGAAGGTGGAGGAGGCATGTCAGGAA 1455
|| || |||||||||| |||||| || | | | | | |||||||||
Sbjct 1474 TTAGAGGTAAATTCGGAAAGAAA--AG--A-G---G----T--A-------TGTCAGGAA 1512
Query 1456 GTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCGGAAGGAGGTATGTCCGGGGGTG 1515
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1513 GTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCGGAAAGTGGTATGTCCGGGAGTG 1572
Query 1516 GAGGAGGTAAACACAAAATCGGAGGAGGTAAACACAAACTTGGAGGAGGTAAACTTGGAA 1575
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1573 GAGGGGGTAAACACAAAATCGGAGGAGGTAAACACAAATTTGGAGGAGGTAAACACGGAG 1632
Query 1576 GTGGAGGTAGCCACATGGCGGAGTAAAGGCCAATGGTC 1613
|||||||| ||||||||||||||||||| ||||||||
Sbjct 1633 GTGGAGGTGGCCACATGGCGGAGTAAAGAACAATGGTC 1670
Score = 388 bits (210), Expect = 7e-107
Identities = 254/275 (92%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 1278 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1337
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1194 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTCGAAGTGAAGGAGGTATATCCGGAGGT 1253
Query 1338 GGTATATCTGGGGGTGGAGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTCTT 1397
||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GGTATGTCTGGGGGCAGTGGAAGTAAACACAAAATTGGAGGAGGTAAACACGGAGGTCTT 1313
Query 1398 GGAAGTAAATTCGGGAAGAAAGGAGGCATGTCCG-AAGGTGGAGGAGGCATGTCAGGAAG 1456
||| |||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 1314 GGAGGTAAATTCGGAAAGAAAAGAGGCATGTCCGGAAG-TGGAGGAGGCATGTCAGGAAG 1372
Query 1457 TGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGAAGGAGGTATGTCCGGGGGTG 1515
|||||||||| ||||||||||||||||| ||||||| ||| || |||||||| ||||||
Sbjct 1373 TGAAGGAGGTGTGTCTGGAAGTGAAGGAAGTATGTCCGGA-GGTGGTATGTCTGGGGGTA 1431
Query 1516 GAGGAGGTAAACACAAAATCGGAGGAGGTAAACAC 1550
| ||| ||||||||||||| |||||||||||||||
Sbjct 1432 GCGGAAGTAAACACAAAATTGGAGGAGGTAAACAC 1466
Score = 270 bits (146), Expect = 3e-71
Identities = 402/517 (78%), Gaps = 52/517 (10%)
Strand=Plus/Plus
Query 660 ATGTC-CGAAGGTGAAGAAGGTATGTCGTCTGG--G-GATGAAGGTATGTCCGGGGGTGA 715
||||| ||| |||||||||||| | |||||| | || | |||||||||||| ||||
Sbjct 1071 ATGTCAGGAA-GTGAAGAAGGTA--T-GTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGG 1126
Query 716 AGGAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGAGGAGCTAA-ATCaaaaa 774
|||||||||||||||| || | || | ||| | || || | |||||| | |||
Sbjct 1127 AGGAGGTAAATCCAAAAGT--A-GA-A-AAA-GT-AAACTC-A-AAGCTAATTTGGGAAA 1177
Query 775 gtaaaaaaGGTATGTCCGGAGG---GTC-CGAGAGTGAAGAAGGTATGTCTGGAAGTGAA 830
| |||||| ||||||||||||| ||| || ||||||| |||||||||| ||||||||
Sbjct 1178 G-AAAAAATGTATGTCCGGAGGCATGTCAGGA-AGTGAAGGAGGTATGTCTCGAAGTGAA 1235
Query 831 GGAGGTATGTCCGGAGGTGG-A--------GG-A---G--GTAAATC-CAAAAGGGGAGG 874
|||||||| ||||||||||| | || | | ||||| | ||||| |||||
Sbjct 1236 GGAGGTATATCCGGAGGTGGTATGTCTGGGGGCAGTGGAAGTAAA-CACAAAATTGGAGG 1294
Query 875 AGGTAAA-AGCGGAGGTCTTCGAGGTAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTG 933
||||||| | |||||||||| |||||||||||||||||||| |||| ||||||||| |||
Sbjct 1295 AGGTAAACA-CGGAGGTCTTGGAGGTAAATTCGGAAAGAAAAGAGGCATGTCCGGAAGTG 1353
Query 934 GCGGAGGCATGTCAGGAAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGA- 992
| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1354 GAGGAGGCATGTCAGGAAGTGAAGGAGGTGTGTCTGGAAGTGAAGGAAGTATGTCCGGAG 1413
Query 993 --GGTAAATCCAAAAGTAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAATACGGAAAG- 1049
|||| || |||| ||| |||||| | | | |||||||| |||| | |
Sbjct 1414 GTGGTATGTCTGGGGGTAGCGGAAGTAAACACAAAATTGGAGGAGGTAAACACGG-AGGT 1472
Query 1050 -AAAGGTGGTAAGTTCGGTGGTG-GAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTG 1107
| | ||||| ||||| | | |||| ||||||||||||||||||||||||||||
Sbjct 1473 CTTA-GAGGTAAATTCGG-AAAGAAAAGAGGTATGTCAGGAAGTGAAGGAGGTATGTCTG 1530
Query 1108 AAAGTGAaggaggtatgtccgaaggaggtatgtccgg 1144
|||||||||||||||||| ||| | |||||||||||
Sbjct 1531 GAAGTGAAGGAGGTATGTCGGAAAGTGGTATGTCCGG 1567
Score = 268 bits (145), Expect = 9e-71
Identities = 562/746 (75%), Gaps = 97/746 (13%)
Strand=Plus/Plus
Query 660 ATGTC-CGAAGGTGAAGAAGGTATGTCGTCTGG--G-GATGAAGGTATGTCCGGGGGTGA 715
||||| ||| |||||||||||| | |||||| | || | |||||||||| | ||||
Sbjct 942 ATGTCAGGAA-GTGAAGAAGGTA--T-GTCTGGAAGTGAAGGAGGTATGTCCAGTGGTGG 997
Query 716 AGGAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGAGGAGCTAAA-TCaaaaa 774
|||| ||||||||||| || | | | ||| | || || | ||||||| | |||
Sbjct 998 AGGAAGTAAATCCAAAAGT--A--A-A-AAAAGT-AAACTC-A-AAGCTAAATTGGGAAA 1048
Query 775 gtaaaaaaGGTATGTCCGGAGG---GTC-CGAGAGTGAAGAAGGTATGTCTGGAAGTGAA 830
| |||||| ||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 1049 G-AAAAAAAGTATGTCCGGAGGCATGTCAGGA-AGTGAAGAAGGTATGTCTGGAAGTGAA 1106
Query 831 GGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGGGGAGGAGGTAAAAGCGGAGGT 890
||||||||||||||||||||||||||||||||||||| | | || |||| | |
Sbjct 1107 GGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAA--GTA-GA---AAAA--GTA-AA 1157
Query 891 CTTC-GAGGTAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTGGCGGAGGCATGTCAGG 949
| || || ||| || ||||||||| | |||| | || |||||||||||||||
Sbjct 1158 C-TCAAAGCTAATTTGGGAAAGAAA--A--AATGT----ATGT-CCGGAGGCATGTCAGG 1207
Query 950 AAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGA---GGTAAATCCAAAAG 1006
||||||||||| ||||||| |||||||||||||||| |||||| |||| || |
Sbjct 1208 AAGTGAAGGAGGTATGTCTCGAAGTGAAGGAGGTATATCCGGAGGTGGTATGTCTGGGGG 1267
Query 1007 TAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAATACGGAAAG-AAAGGTGGTAAGTTCG 1065
|| ||| |||||| | | | |||||||| |||| | | || ||||| ||||
Sbjct 1268 CAGTGGAAGTAAACACAAAATTGGAGGAGGTAAACACGG-AGGTCTTGGAGGTAAATTCG 1326
Query 1066 GTGGTG-GAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGAAAGTGAaggaggtatg 1124
| | | |||||||||| ||||||| |||||| ||||| | ||||||||||||| ||
Sbjct 1327 G-AAAGAAAAGAGGCATGTCCGGAAGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTGTG 1385
Query 1125 tccgaaggaggtatgtccggaggaggtatgtccggaggaggtatgtccggaggaggtatg 1184
| | ||| | || | |||| ||||||||||||| ||||||| | | || |||| |
Sbjct 1386 T-C--TGGA---A-GT--GAAGGAAGTATGTCCGGAGGTGGTATGT-CTG-GG-GGTA-G 1432
Query 1185 tccggaggtggaggaggtaAACACAA-TGGAAAAGGTAAACACGGAGGTCTTGGAGGTAA 1243
|||| || | | | ||| || |||| ||||||||||||||||||| |||||||
Sbjct 1433 --CGGAAGT--A--A---ACACAAAATTGGAGGAGGTAAACACGGAGGTCTTAGAGGTAA 1483
Query 1244 ATTCGGAAAGAAAGGAGGCATGTCTGAACGTGGAGGAGGCATGTCAGGAAGTGAAGGAGG 1303
||||||||||||| | | | | || ||||||||||||||||||||
Sbjct 1484 ATTCGGAAAGAAA--A-G-A-----G---GT---------ATGTCAGGAAGTGAAGGAGG 1522
Query 1304 TATGTCTGGAAGTGAAGGAGGTATGTCCGGAG-GTGGTATATCTGGGGGTGGAGGAAGTA 1362
||||||||||||||||||||||||||| ||| ||||||| || ||| ||||||| |||
Sbjct 1523 TATGTCTGGAAGTGAAGGAGGTATGTC-GGAAAGTGGTATGTCCGGGAGTGGAGGGGGTA 1581
Query 1363 AACACAAAATTGGAGGAGGTAAACAC 1388
|||||||||| |||||||||||||||
Sbjct 1582 AACACAAAATCGGAGGAGGTAAACAC 1607
Score = 191 bits (103), Expect = 2e-47
Identities = 381/501 (76%), Gaps = 75/501 (15%)
Strand=Plus/Plus
Query 662 GTCCGAAG-GTGAAGAAGGTATGTCGTCTGG--G-GATGAAGGTATGTCCGGGGGTGAAG 717
||||| || |||||||||||| | |||||| | || | ||||||||| || |||| ||
Sbjct 815 GTCCG-AGAGTGAAGAAGGTA--T-GTCTGGAAGTGAAGGAGGTATGTCTGGTGGTGGAG 870
Query 718 GAGGTAAATCCAAACGTGGAGGACATAAATCTGGAAGTCGAGGAGCTAAA-TCaaaaagt 776
|| ||||||||||| || | | | ||| | || || | ||||||| | ||||
Sbjct 871 GAAGTAAATCCAAAAGT--A--A-A-AAAAGT-AAACTC-A-AAGCTAAATTGGGAAAG- 920
Query 777 aaaaaaGGTATGTCCGGAGG---GTC-CGAGAGTGAAGAAGGTATGTCTGGAAGTGAAGG 832
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 921 AAAAAAGGTATGTCCGGAGGCATGTCAGGA-AGTGAAGAAGGTATGTCTGGAAGTGAAGG 979
Query 833 AGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGGGGAGGAGGTAAAAGCGGAGGTCT 892
|||||||||| | ||||||||| ||||||||||||| | | ||||| | ||
Sbjct 980 AGGTATGTCCAGTGGTGGAGGAAGTAAATCCAAAAGTA-A--A---AAAAGTAAA---CT 1030
Query 893 TCGAGG-TAAATTCGGAAAGAAAGGAGGTATGTCCGGAGGTGGCGGAGGCATGTCAGGAA 951
| | | |||||| ||||||||| | ||||||||||||| | | |||||||||
Sbjct 1031 -CAAAGCTAAATTGGGAAAGAAAAAAAGTATGTCCGGAGG---C--A----TGTCAGGAA 1080
Query 952 GTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT--A--A---A--TCCA 1002
|||||| || |||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 1081 GTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCA 1140
Query 1003 AAAGTAGAGGAGGTAAACTCGGAGGTC-TTCGAGGTAAATACGGAAAGAAAGGTGGTAAG 1061
|||||||| | |||||||| || | || | || ||| | ||| ||| || || |
Sbjct 1141 AAAGTAGAAAAAGTAAACTCAAAGCTAATTTG-GG-AAA---G-AAA-AAA--TG-TATG 1190
Query 1062 TTCGGTGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGTATGTCT-GAAAGTGAaggagg 1120
| ||| ||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1191 TCCGG------AGG---CATGTCAGGAAGTGAAGGAGGTATGTCTCGAA-GTGAAGGAGG 1240
Query 1121 tatgtccgaaggaggtatgtc 1141
||| |||| ||| ||||||||
Sbjct 1241 TATATCCGGAGGTGGTATGTC 1261
Score = 145 bits (78), Expect = 2e-33
Identities = 101/112 (90%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 1440 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGAAGG 1498
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||
Sbjct 1194 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTCGAAGTGAAGGAGGTATATCCGGA-GG 1252
Query 1499 AGGTATGTCCGGGGGTGGAGGAGGTAAACACAAAATCGGAGGAGGTAAACAC 1550
|||||||| ||||| | ||| ||||||||||||| |||||||||||||||
Sbjct 1253 TGGTATGTCTGGGGGCAGTGGAAGTAAACACAAAATTGGAGGAGGTAAACAC 1304
Score = 134 bits (72), Expect = 3e-30
Identities = 250/327 (76%), Gaps = 48/327 (15%)
Strand=Plus/Plus
Query 810 GAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGGAGGAGGTAAATCCAAAAGG 869
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 702 GAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGAAGGAGGTAAATCCAAAAGT 761
Query 870 GGAGGAGGTAAAAGCGGAGGTCTTCGAGGTAAATTCGGAAAGAAAGGAGGTATGTCCGGA 929
||| ||||||| | || || |||| ||| ||||||| |||||||||||||
Sbjct 762 GGAAAAGGTAAA--C-----TCAA--AGCTAAACTCGAAAAGAAAAAAGGTATGTCCGGA 812
Query 930 GGTGGCGGAGGCATGTCAGGAAGTGAAGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCC 989
|| | | ||| | || | ||| |||| |||||||||||||||||||||||||||
Sbjct 813 GG-GTCCGAG--A-GT--G-AAG--AAGG---TATGTCTGGAAGTGAAGGAGGTATGTCT 860
Query 990 GG------AGG---TAAATCCAAAAGTAGAGGAGGTAAACTCGGAGGTCTTCGAGGTAAA 1040
|| ||| |||||||||||||| | | |||||||| || || | ||
Sbjct 861 GGTGGTGGAGGAAGTAAATCCAAAAGTAAAAAAAGTAAACTCAAAG--CT---A---AAT 912
Query 1041 TACGGAAAGAAAGGTGGTAAGTTCGGTGGTGGAGGAGGCATGTCAGGAAGTGAAGGAGGT 1100
| ||||||||| |||| || ||| ||| ||||||||||||||||| ||||
Sbjct 913 TG-GGAAAGAAAAAAGGTATGTCCGG------AGG---CATGTCAGGAAGTGAAGAAGGT 962
Query 1101 ATGTCTGAAAGTGAaggaggtatgtcc 1127
||||||| |||||||||||||||||||
Sbjct 963 ATGTCTGGAAGTGAAGGAGGTATGTCC 989
Score = 110 bits (59), Expect = 6e-23
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1278 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1337
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1065 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1124
Query 1338 GG 1339
||
Sbjct 1125 GG 1126
Score = 99.0 bits (53), Expect = 1e-19
Identities = 59/62 (95%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1278 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 1337
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 936 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCAGTGGT 995
Query 1338 GG 1339
||
Sbjct 996 GG 997
Score = 93.5 bits (50), Expect = 6e-18
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1440 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC 1492
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 936 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTC 988
Score = 93.5 bits (50), Expect = 6e-18
Identities = 55/57 (96%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 1440 GGAGGCATGTCAGGAAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGA 1495
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1065 GGAGGCATGTCAGGAAGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGA 1121
Score = 75.0 bits (40), Expect = 2e-12
Identities = 194/263 (74%), Gaps = 32/263 (12%)
Strand=Plus/Plus
Query 591 GGAGGTAAATTCGG-TGGTAAAAAAGGTAAGTCAGGGGGTGGAAAAGGTAAATTTGGAGG 649
|||||||||||||| | |||| ||| | ||| || ||||| ||| | | ||| |
Sbjct 1314 GGAGGTAAATTCGGAAAG-AAAAGAGGCATGTCCGGAAGTGGAGGAGGCATGTCAGGAAG 1372
Query 650 TAAAGGCGGTATGTC-CGAAGGTGAA-GAAGGTATGTCGTCTGGGGATGAAGGTATGTCC 707
| |||| ||| |||| ||| ||||| ||| ||||||| | ||| | ||||||||
Sbjct 1373 TGAAGGAGGTGTGTCTGGAA-GTGAAGGAA-GTATGTC--C---GGA-GGTGGTATGTCT 1424
Query 708 GGGGGTGA-AGGAGGTAAATC-CAAACGTGGAGGACATAAATC-TGGAAGTC-GAGGAGC 763
|||||| | ||| ||||| | |||| ||||||| |||| | ||| ||| | |||
Sbjct 1425 GGGGGT-AGCGGAAGTAAA-CACAAAATTGGAGGAGGTAAA-CACGGAGGTCTTA-GAGG 1480
Query 764 TAAA-TCaaaaagtaaaaaaGGTATGTCCGGAGGGTCCGAGAGTGAAGAAGGTATGTCTG 822
|||| || |||| |||| |||||||| | | | || ||||||| |||||||||||
Sbjct 1481 TAAATTCGGAAAG-AAAAGAGGTATGT-C--A--G---GA-AGTGAAGGAGGTATGTCTG 1530
Query 823 GAAGTGAAGGAGGTATGTCCGGA 845
||||||||||||||||||| |||
Sbjct 1531 GAAGTGAAGGAGGTATGTC-GGA 1552
Score = 73.1 bits (39), Expect = 8e-12
Identities = 80/99 (81%), Gaps = 5/99 (5%)
Strand=Plus/Plus
Query 1400 AAGTAAATTCGGGAAG-AAAGGAGGCATGTCCGAAGGTGGAGGAGGCATGTCAG-GAAGT 1457
||||||||| ||| | ||||| || | ||||||||||| || ||| ||||| | |
Sbjct 641 AAGTAAATT-TGGAGGTAAAGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTC-GTCTGGG 698
Query 1458 GAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC-GGA 1495
|| | |||||||||||||||||||||||||||||| |||
Sbjct 699 GATGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGA 737
Score = 73.1 bits (39), Expect = 8e-12
Identities = 81/101 (80%), Gaps = 4/101 (4%)
Strand=Plus/Plus
Query 1240 GTAAATTCGGAAAG-AAAGGAGGCATGTCTGAACGTGGAGGAGGCATGTCAG-GAAGTGA 1297
||||||| || | | ||||| || | ||| ||| ||| || ||| ||||| | | ||
Sbjct 643 GTAAATTTGG-AGGTAAAGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTC-GTCTGGGGA 700
Query 1298 AGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTG 1338
| ||||||||||||||||||||||||||||||||||||||
Sbjct 701 TGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTG 741
Score = 73.1 bits (39), Expect = 8e-12
Identities = 129/168 (77%), Gaps = 24/168 (14%)
Strand=Plus/Plus
Query 1175 aggaggtatgtccggaggtggaggaggtaAA--CACAA-TGGAAAAGGTAAACACGGAGG 1231
|||||||||||||||||||| |||||||||| || || |||||||||| || ||
Sbjct 722 AGGAGGTATGTCCGGAGGTGAAGGAGGTAAATCCAAAAGTGGAAAAGGT-AA-AC----- 774
Query 1232 TCTTGGAGGTAAATTCGGAAAGAAAGGAGGCATGTCTGAACGTGGAGGAGGCATGTCAGG 1291
|| || |||| ||| ||||||| ||| ||||| | ||||| | | | | |
Sbjct 775 TC--AAAGCTAAACTCGAAAAGAAAAAAGGTATGTC----C--GGAGG-GTC-CG--A-G 821
Query 1292 AAGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGTGG 1339
||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 822 -AGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCTGGTGGTGG 868
Score = 71.3 bits (38), Expect = 3e-11
Identities = 80/100 (80%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 898 GTAAATTCGGAAAG-AAAGGAGGTATGTCCGGAGGTGGCGGAGGCATGTCAG-GAAGTGA 955
||||||| || | | ||||| |||| ||||| ||||| | ||| ||||| | | ||
Sbjct 643 GTAAATTTGG-AGGTAAAGGCGGTAAGTCCGAAGGTGAAGAAGGTATGTC-GTCTGGGGA 700
Query 956 AGGAGCTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 995
| || ||||||||||||||||||||||||||||||||||
Sbjct 701 TGAAGGTATGTCTGGAAGTGAAGGAGGTATGTCCGGAGGT 740
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1455 AGTGAAGGAGGTATGTCTGGAAGTGAAGGAGGTATGTC 1492
||||||| ||||||||||||||||||||||||||||||
Sbjct 822 AGTGAAGAAGGTATGTCTGGAAGTGAAGGAGGTATGTC 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5