BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940215
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07540.1 | Symbols: GRP16, ATGRP16, ATGRP-6 | glycine-rich p... 918 0.0
> AT5G07540.1 | Symbols: GRP16, ATGRP16, ATGRP-6 | glycine-rich
protein 16 | chr5:2386066-2387249 REVERSE LENGTH=924
Length=924
Score = 918 bits (497), Expect = 0.0
Identities = 696/784 (89%), Gaps = 45/784 (6%)
Strand=Plus/Plus
Query 1 GATCAAACGTAACTCACAAAATGTTCTCGTTTCTCATCCCAGTTGTACAGCTTTTTCAGG 60
||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 24 GATCAAACGTAACTCACAAAATGCTCTCGTTTCTTATCCCAGTTGTACAGTTTTTTCAGG 83
Query 61 TGGTTATCGCTGGCGCAGCATCTGTAGTCTTCTT-GCTGTTCGCCGGTATAACCTTCGGT 119
|||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 84 TGGTTATCGCTGCCGTAGCATCTGTAGTCTTCTTAG-TGTTCGCCGGTATAACCTTCGGT 142
Query 120 GCCTCAATTGTGGGACTAACCATAGCCACACCGCTTTTTGTCATCTTCAGTCCGATTCTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 GCCTCAATTGTGGGACTAACCATAGCCACACCGCTTTTTGTCATCTTCAGTCCGATTCTC 202
Query 180 GTACCAGCCACTATAGCCACTACTCTCGTAGTCGGAGGGGCTACGGCTACAGTTGCCCTC 239
|||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||
Sbjct 203 GTACCAGCCACTATAGCCACTACTTTCCTAGTCGGAGGGGCTACCGCTGCAGTTGCCCTA 262
Query 240 GGAGTGACGGCATTTGCTCTCATATTTTGGCTCTTTAAACATAGGATTGGAGTAAAACCG 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 263 GGAGTGACGGCATTTGCTCTCATACTTTGGCTCTTTAAACATAGGATTGGAGTAAAACCG 322
Query 300 AAGAACAATCCAGCTCCGAAAGGAGCCCCAACCAAAGCAGATCAACCGGGGGCGTCGGAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 323 AAGAACAATCCAGCTCCGAAAGGAGCCCCAACCAAAGCAGATCAACCGGGAGCGTCGGGA 382
Query 360 GGAGCGTCTGGAGATAAACCGGGAGAAATGTCAGGAGCAGGGGGACTGTCGGGAGATAAA 419
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 383 GGAGCGTCTGGAGATAAACCGGGAGAAATGTCAGGAGCAGGAGGACCGTCGGGAGATAAA 442
Query 420 TCAGGAGGAGCGCCTGGAG-A-----TAAACGGGGAGAAATGTCAGGAG-ATAAACCggg 472
||||||||||| |||||| | ||||| ||||| | ||| |||| | | || ||
Sbjct 443 CCAGGAGGAGCGTCTGGAGGAGGAGATAAACCGGGAGGAGCGTCGGGAGGAGGA-CCTGG 501
Query 473 aggagcgtcgggaggag-gacctggaggggcgtcgggaggagtgtcaggaggagcgcctg 531
||||||||||||||||| | | ||||| ||||||||||||| ||| ||||||||| | |
Sbjct 502 AGGAGCGTCGGGAGGAGCGTCG-GGAGGAGCGTCGGGAGGAGCGTCGGGAGGAGCGTCGG 560
Query 532 gaggagcgcctggagga---cctggaggggcgtccggaggag-agcctggaggagcgtcg 587
|||||||| | |||||| |||||||| ||||| ||||||| | |||||||||||||||
Sbjct 561 GAGGAGCGTCGGGAGGAGGACCTGGAGGAGCGTCGGGAGGAGGA-CCTGGAGGAGCGTCG 619
Query 588 ggaggagcg-cctggaggagcatcgggaggagcgtcgggagATAAACCCGGG-GGAGCGT 645
||||||| | ||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 620 GGAGGAG-GACCTGGAGGAGCGTCGGGAGGAGCTTCGGGAGATAAACC-GGAAGGAGCAC 677
Query 646 CGGGAGATAAACC-GGGGGA--A---------A--C-G---------CCAGGACATAGAC 681
||||||||||||| |||||| | | | | |||||||||| ||
Sbjct 678 CGGGAGATAAACCCGGGGGAGCATGGGGGGGTAAACCGGGGAAAAAGCCAGGACATAAAC 737
Query 682 CGGCGGGAGCGCGAGGAGGTAAACGGCTTGCGTGGTGGTAAGGATGATCATATGGAGCAA 741
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CGGAGGGAGCGCGAGGAGGTAAACGGCTTGCGTGGTGGTAAGGATGATCATATGGAGCAA 797
Query 742 CTTG 745
||||
Sbjct 798 CTTG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5