BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940220
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07580.1 | Symbols: | Integrase-type DNA-binding superfamil... 1035 0.0
> AT5G07580.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:2399504-2400601 FORWARD LENGTH=1098
Length=1098
Score = 1035 bits (560), Expect = 0.0
Identities = 633/668 (95%), Gaps = 6/668 (1%)
Strand=Plus/Plus
Query 1 TTCTTTCTCTCTTTCGaaaaaaaTGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTAT 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TTCTTTCTCTCTTTCG-TAAAAATGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTAT 260
Query 61 ACAGAACCATCTCTTTGAAGACTTGTTGGTTTGTGATGGCTTCATGGGAGATTTTGACTT 120
||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 261 ACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGGAGATTTTGACTT 320
Query 121 TGATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCTCAGGTTCCTAAACAAGAACC 180
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 321 CGATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCACACGTTCCTAAACAAGAACC 380
Query 181 CGATTCTCCAGTTCTTGATCCGGATTCTTTCGTTAATGAGTTTCTT-CAAGTGGAAGGTG 239
|||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||| |
Sbjct 381 TGATTCTCCAGTTCTTGATCCGGATTCTTTCGTCAACGAG-TTCTTGCAAGTGGAAGGGG 439
Query 240 -A--ATCATCATCATCATCACCAGAGCTGAACTCATCATCGTCAACATATGAGACTGATC 296
| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 440 AATCATCATCATCATCATCACCAGAGCTGAATTCATCGTCATCAACATATGAGACTGATC 499
Query 297 AGAGTGTGAAAAAGGCAGAGAGGTTCGAAGAAGAAGAAGAAGCGAGACATTACCGAGGAG 356
|||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 500 AGAGTGTGAAAAAGGCAGAGAGGTTCGAAGAAGAAGTAGATGCTAGACATTACCGAGGAG 559
Query 357 TGAGACGAAGACCGTGGGGGAAATTCGCAGCAGAGATTCGGGATCCAGCAAAGAAAGGAT 416
|||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 560 TGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGATTCGAGATCCAGCAAAGAAAGGAT 619
Query 417 CAAGAATCTGGCTTGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTG 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CAAGAATCTGGCTAGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTG 679
Query 477 CAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTACTCAACTTTCCTCTTGACGCCGGGAAAT 536
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 680 CAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCAACTTCCCTCTTGACGCCGGGAAAT 739
Query 537 ATGAAGCTCCGGCGAATTCAGGAAGGAAAAGAAAGAGAAGTGATGTGCAGGAAGAGCTTC 596
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 740 ATGAAGCTCCAGCGAATTCAGGAAGGAAAAGGAAGAGAAGTGATGTGCATGAAGAGCTTC 799
Query 597 AAAGAACTCAGAGCAATTCATCTTCATCTTCCTGTGATGCATTTTAACAGATTAAGAGTG 656
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 800 AAAGAACTCAGAGCAATTCATCTTCATCTTCCTGTGATGCATTTTAGCATATTAAGAGTG 859
Query 657 TGAGCAGT 664
||||||||
Sbjct 860 TGAGCAGT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5