BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940223
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07610.1 | Symbols: | F-box family protein | chr5:2406068-2... 1807 0.0
> AT5G07610.1 | Symbols: | F-box family protein | chr5:2406068-2407330
FORWARD LENGTH=1263
Length=1263
Score = 1807 bits (978), Expect = 0.0
Identities = 1182/1277 (93%), Gaps = 27/1277 (2%)
Strand=Plus/Plus
Query 24 ATGTCTTCTTGTTCAAGAGCGAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 83
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCCTCTTGTTCAAGAACAAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 60
Query 84 GGTGGTTTCTCTTCCTCATCAGCTACAATTGTGGCTA-ATATCGACGATGTCTTGATTCA 142
|||||||||||||| ||||| |||||||||||||| | ||||||| ||||||||||||||
Sbjct 61 GGTGGTTTCTCTTCTTCATCGGCTACAATTGTGGC-AGATATCGATGATGTCTTGATTCA 119
Query 143 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 179
Query 203 GCTTTCGCTCATTACAAATCCC-GATTTCTCCAACCGTGTCATCAAGTCCAATCACCCCT 261
|||||||||||||||||| ||| | |||||| |||||||||||||||||||| |||||||
Sbjct 180 GCTTTCGCTCATTACAAA-CCCTGTTTTCTCAAACCGTGTCATCAAGTCCAACCACCCCT 238
Query 262 TGCCCATTTCTGGCTTTTTCTTACACTCACCAAGAGCCATCAAGTATAGTTTTGTCTCTC 321
| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 239 TACCCATCTCTGGCTTTTTCTTACACTCACCAAGAGAGATCAAGTATAGCTTTGTCTCTC 298
Query 322 TTGATGATGAAGATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 381
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 -T--TGAT---GATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 352
Query 382 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGCCTTCTCCTCTGCCAAT 441
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 353 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGACTTCTCCTCTGCAAAT 412
Query 442 GCTCTTGTGCTTCTTCTAACCAATTCAACACAAATTACTATGTTTACAATCCGACGACGA 501
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 413 GTTCTTGTGCTTCTTCTAACCATTTCAACACAAATTACTATGTTTATAATCCGACGACAA 472
Query 502 AACAGTACACTCTTCTCCCTCAGATCACTGGTCACATCGCACTCTC-TCTAGCCTTTGAT 560
|||||||||||||||||| ||||||| | ||||||||||||||||| | |||||||||||
Sbjct 473 AACAGTACACTCTTCTCCATCAGATCGCCGGTCACATCGCACTCTCAT-TAGCCTTTGAT 531
Query 561 CCTTCTAA-ATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGTAACAACTCTGT 619
||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 532 CCTTC-AAGATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGCAACAACTCTTT 590
Query 620 TTCCTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCCAATGAAGGACT 679
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 591 TTCTTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCTAATGAAGGACT 650
Query 680 TTGGAGAAGAGTTGTTCCAGCTCTAACTTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 739
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 651 TTGGAGAAGAGTTGTTCCAGTTCCAACCTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 710
Query 740 AGTCTTCTGGAATGGCGCGGTTCACTGGTACGGTCTCAGCTCTAGAGATTGCCTCTCTTT 799
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 711 AGTCTTCTGGAATGGCGCGGTTAACTGGTACGGTTTCAGCTCTAGAGATTGCCTCTCTTT 770
Query 800 CGATATCAGTA-AGGAGGAAATCAAGATTCTCCCACTCCCTGATCTTGA-CGATGAAGAA 857
|||||||| || | |||||||||||||||| ||||||||||||| ||| | |||||||
Sbjct 771 CGATATCAATACAC-AGGAAATCAAGATTCTTCCACTCCCTGATCATGAAC-ATGAAGAC 828
Query 858 GCGCTGCTACCTGATCCCAGGACATTGAGGTTTTTGGATGAATCCCGGGGAAATCTTTAC 917
| | ||||||||||||||||| | ||| |||| |||||||||||| |||||||||||||
Sbjct 829 GAACCGCTACCTGATCCCAGGATACTGATGTTTCTGGATGAATCCCAGGGAAATCTTTAC 888
Query 918 TATATCGAGGTAAATGATCAAAGTTCTTCAGATATACCGGTATACGAAATGGAAAGAAAC 977
||||| ||||||||| |||| || |||||| || ||| ||| |||||||||||||| |||
Sbjct 889 TATATTGAGGTAAATAATCAGAGCTCTTCAAATTTACGGGTTTACGAAATGGAAAGCAAC 948
Query 978 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1008
Query 1038 GAGATGAT-A-A-CCGAAGACTATACCAATAGGCGGATCTACGCGTTCTCTGTCATCGGT 1094
|||||||| | | ||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 1009 GAGATGATCAGAACCGAATACTATACCGATAGGCGGATTTACGCGTTCTCTGTCATCGGT 1068
Query 1095 TTCGTAAAGGAAGAGACAGATGCGGAATCTTACATTTTGCTTCACATTCCAAAT-AAGGC 1153
|| |||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||| |
Sbjct 1069 TTTGTAAAGGAAGAGACAGATGCAGCATCATACATTTTGCTCCACATTCCAAACCAAG-C 1127
Query 1154 TGTAAAATACAACTTCATAGACAAGACTTTCAAGAAACTTTGTAATTTCAAGCCATTGGT 1213
|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1128 TGTAAAGTACAACTTCATAGACAAGACTTTCAAGAAACTTTGTGATTTCAAGTCATTGGT 1187
Query 1214 CAATGATGCTCCTGAAGATGCGTTTT-ACAGATTCCAAAGAACTTTCCCA-TTCATCAAG 1271
||||||||||||||| ||| | |||| ||||||||||||||||||||| | |||||||||
Sbjct 1188 CAATGATGCTCCTGAGGAT-CATTTTTACAGATTCCAAAGAACTTTCC-AGTTCATCAAG 1245
Query 1272 TCTCTTGCTAATGTCTA 1288
|||||||||||||||||
Sbjct 1246 TCTCTTGCTAATGTCTA 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5