BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940223 Length=1309 Score E Sequences producing significant alignments: (Bits) Value AT5G07610.1 | Symbols: | F-box family protein | chr5:2406068-2... 1807 0.0 > AT5G07610.1 | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=1263 Length=1263 Score = 1807 bits (978), Expect = 0.0 Identities = 1182/1277 (93%), Gaps = 27/1277 (2%) Strand=Plus/Plus Query 24 ATGTCTTCTTGTTCAAGAGCGAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 83 ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCCTCTTGTTCAAGAACAAGAACAAAAGCTCCAAGATCGGCCAGAAGCCGTAGAAAT 60 Query 84 GGTGGTTTCTCTTCCTCATCAGCTACAATTGTGGCTA-ATATCGACGATGTCTTGATTCA 142 |||||||||||||| ||||| |||||||||||||| | ||||||| |||||||||||||| Sbjct 61 GGTGGTTTCTCTTCTTCATCGGCTACAATTGTGGC-AGATATCGATGATGTCTTGATTCA 119 Query 143 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AATCCTCTCTTTTCTTCCAATCAAAACTCTTTTAAGATTCAAACGCGTATCCAAACGCTG 179 Query 203 GCTTTCGCTCATTACAAATCCC-GATTTCTCCAACCGTGTCATCAAGTCCAATCACCCCT 261 |||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||||||| Sbjct 180 GCTTTCGCTCATTACAAA-CCCTGTTTTCTCAAACCGTGTCATCAAGTCCAACCACCCCT 238 Query 262 TGCCCATTTCTGGCTTTTTCTTACACTCACCAAGAGCCATCAAGTATAGTTTTGTCTCTC 321 | ||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 239 TACCCATCTCTGGCTTTTTCTTACACTCACCAAGAGAGATCAAGTATAGCTTTGTCTCTC 298 Query 322 TTGATGATGAAGATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 381 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 -T--TGAT---GATGACGCAACCAACCAACGGATTTCATCATCATTACCACTTTGGTTTA 352 Query 382 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGCCTTCTCCTCTGCCAAT 441 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 353 CTGATCATCAAACAGATATGATCATAATGCAATCAACCAATGGACTTCTCCTCTGCAAAT 412 Query 442 GCTCTTGTGCTTCTTCTAACCAATTCAACACAAATTACTATGTTTACAATCCGACGACGA 501 | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | Sbjct 413 GTTCTTGTGCTTCTTCTAACCATTTCAACACAAATTACTATGTTTATAATCCGACGACAA 472 Query 502 AACAGTACACTCTTCTCCCTCAGATCACTGGTCACATCGCACTCTC-TCTAGCCTTTGAT 560 |||||||||||||||||| ||||||| | ||||||||||||||||| | ||||||||||| Sbjct 473 AACAGTACACTCTTCTCCATCAGATCGCCGGTCACATCGCACTCTCAT-TAGCCTTTGAT 531 Query 561 CCTTCTAA-ATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGTAACAACTCTGT 619 ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 532 CCTTC-AAGATCTCCTCACTATAAAGTCTTTTGCCTCAGAGGAAGAAGCAACAACTCTTT 590 Query 620 TTCCTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCCAATGAAGGACT 679 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 591 TTCTTCTGCCTCTGACTCTGAACTTTACCACATAGAGGTTTATTCCTCTAATGAAGGACT 650 Query 680 TTGGAGAAGAGTTGTTCCAGCTCTAACTTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 739 |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 651 TTGGAGAAGAGTTGTTCCAGTTCCAACCTCTCCTTCAACCTTTATAGAGTTCAGCTACTC 710 Query 740 AGTCTTCTGGAATGGCGCGGTTCACTGGTACGGTCTCAGCTCTAGAGATTGCCTCTCTTT 799 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 711 AGTCTTCTGGAATGGCGCGGTTAACTGGTACGGTTTCAGCTCTAGAGATTGCCTCTCTTT 770 Query 800 CGATATCAGTA-AGGAGGAAATCAAGATTCTCCCACTCCCTGATCTTGA-CGATGAAGAA 857 |||||||| || | |||||||||||||||| ||||||||||||| ||| | ||||||| Sbjct 771 CGATATCAATACAC-AGGAAATCAAGATTCTTCCACTCCCTGATCATGAAC-ATGAAGAC 828 Query 858 GCGCTGCTACCTGATCCCAGGACATTGAGGTTTTTGGATGAATCCCGGGGAAATCTTTAC 917 | | ||||||||||||||||| | ||| |||| |||||||||||| ||||||||||||| Sbjct 829 GAACCGCTACCTGATCCCAGGATACTGATGTTTCTGGATGAATCCCAGGGAAATCTTTAC 888 Query 918 TATATCGAGGTAAATGATCAAAGTTCTTCAGATATACCGGTATACGAAATGGAAAGAAAC 977 ||||| ||||||||| |||| || |||||| || ||| ||| |||||||||||||| ||| Sbjct 889 TATATTGAGGTAAATAATCAGAGCTCTTCAAATTTACGGGTTTACGAAATGGAAAGCAAC 948 Query 978 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1037 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 AGCTCAAGCTGGTCCGTGAAGTATAATGTTGATTTAGAGCCTCTTGCAGCCGCTTTCCCC 1008 Query 1038 GAGATGAT-A-A-CCGAAGACTATACCAATAGGCGGATCTACGCGTTCTCTGTCATCGGT 1094 |||||||| | | ||||| |||||||| |||||||||| ||||||||||||||||||||| Sbjct 1009 GAGATGATCAGAACCGAATACTATACCGATAGGCGGATTTACGCGTTCTCTGTCATCGGT 1068 Query 1095 TTCGTAAAGGAAGAGACAGATGCGGAATCTTACATTTTGCTTCACATTCCAAAT-AAGGC 1153 || |||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||| | Sbjct 1069 TTTGTAAAGGAAGAGACAGATGCAGCATCATACATTTTGCTCCACATTCCAAACCAAG-C 1127 Query 1154 TGTAAAATACAACTTCATAGACAAGACTTTCAAGAAACTTTGTAATTTCAAGCCATTGGT 1213 |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1128 TGTAAAGTACAACTTCATAGACAAGACTTTCAAGAAACTTTGTGATTTCAAGTCATTGGT 1187 Query 1214 CAATGATGCTCCTGAAGATGCGTTTT-ACAGATTCCAAAGAACTTTCCCA-TTCATCAAG 1271 ||||||||||||||| ||| | |||| ||||||||||||||||||||| | ||||||||| Sbjct 1188 CAATGATGCTCCTGAGGAT-CATTTTTACAGATTCCAAAGAACTTTCC-AGTTCATCAAG 1245 Query 1272 TCTCTTGCTAATGTCTA 1288 ||||||||||||||||| Sbjct 1246 TCTCTTGCTAATGTCTA 1262 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64407299235 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5