BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940242 Length=3625 Score E Sequences producing significant alignments: (Bits) Value AT5G07810.1 | Symbols: | SNF2 domain-containing protein / heli... 5616 0.0 > AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein | chr5:2491283-2498484 REVERSE LENGTH=3702 Length=3702 Score = 5616 bits (3041), Expect = 0.0 Identities = 3430/3616 (95%), Gaps = 34/3616 (1%) Strand=Plus/Plus Query 21 ATGGAGGTTTCCGAAGAGCAACGGCGGAGAGACGAAGCGAAC-CGATTAGCTTTTGCGGA 79 ||||||||||||||||||||| |||| |||||||||||| || || |||||||||||||| Sbjct 1 ATGGAGGTTTCCGAAGAGCAAAGGCGAAGAGACGAAGCG-ACTCGGTTAGCTTTTGCGGA 59 Query 80 GAAACGAAAGAC-GTCGTTTGATTCTTCAGAAAACCCACAGCGACAACAAGATTTCAGGT 138 |||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 60 GAAACGAAAG-CAGTCGTTCGATTCTTCGGAAAACCCACAGCGACAACAAGATTTCAGGT 118 Query 139 TAGCTAAATGTCGAAAGCTCGACGGTGGTAAAGATGTCTGTTTTCAAGAAGGGTATCGGA 198 ||||||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||||| Sbjct 119 TAGCTAAATGTCGAAAGCTTGACGGTAGTAACGATGTGTGTCCTCAAGAAGGGTATCGGA 178 Query 199 ACTACGAACCGGAACGAGGATTGAGTACTAGTGTACCGGAAAAGTTCCGCGTCAGGCTCG 258 |||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||| Sbjct 179 ACTACGAACCGGTACGAGTATTGAGTACTAGTGTGCCGGAAAAGTTTCGCGTCAGGCTCG 238 Query 259 AGATCTGTTCTCCTGATTCGTTTTCGGTGACGCCGGTTCAATTGCAAGGGTTTCGATGCC 318 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 239 AGATCTGTTCTCCTGATTCGTTTTCGGTTACGCCGGTTCAATTGCAAGGGTTTCGATGCC 298 Query 319 CAGAAGAGCAAGAGTGTCTTCGTCAATTGAGAGAGATTCTATCTGAGGCGATTCCTTTAC 378 | ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 299 CTGAAGAACAAGAGTGCCTTCGTCAATTGAGAAAGATTCTATCTGATGCGATTCCTTTAC 358 Query 379 ACTACACTCAAAATGATGACGGAGGAAAAGCTGGGGTTTATAAGATTAGGGACTACAATA 438 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 359 ACTACACTCAAAATGATGATGGAGGAAAAGCTGGGGTTTATAAGATTAGAGACTACAATA 418 Query 439 TGGTCTCTGGATGTCTAAAAAGGTCCAAGAGCGTTGAAGTTGAAGAGATACCTTGGAAAA 498 ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| Sbjct 419 AGGTCTCTGGATGTCTTAAAAGGTCCAAGAGCGTTGAAGTTGAAGGGGTACCTTGGAAAA 478 Query 499 CGTTGGCTGTTGTTGAGAAACTTTCCCAGTCAT-TCATTTCTGGGAAATGGCAACCTTGT 557 ||||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||| Sbjct 479 CGTTGGCTGTTGTTGAGAAACTTTCTCAGTCATAT-ATTTCCGGGAAATGGCAACCTTGT 537 Query 558 ATACCTGAACATTATACGGAGGAGAAGGTTGAACAACTGATTGAAACCCTGCCAAGAAAA 617 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 538 TTACCTGAACATTATACGGAGGAGAAGGTTGAACAACTGATTGAAACCCTGCCAAGGAAA 597 Query 618 TTGGTGAATGCCCTTTTGCCTTTCCAACTTGATGGTCTAAGATTTGGTTTACGGAGAGGT 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TTGGTGAATGCCCTTTTGCCTTTCCAACTTGATGGTCTAAGATTTGGTTTACGGAGAGGT 657 Query 678 GGCAGGTGTTTCATTGCTGATGAAATGGGGCTTGGAAAGACGCTTCAGGCCATTGCCATT 737 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 658 GGCAGGTGTTTCATTGCTGATGAAATGGGGCTTGGAAAGACGCTTCAGGCCATCGCCATT 717 Query 738 GCTGGTTGCTTCATAAGTGAGGGTTCCATACTTGTTGTCTGTCCAGCTGTTCTGCGTTTC 797 || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 718 GCCGGTTGCTTCATAAGTGAGGGTTCCATACTTGTTGTCTGTCCTGCTGTTTTGCGTTTC 777 Query 798 TCATGGGCAGAAGAATTGGAACGTTGGTTGCCATTTTGTTTGCCTTCTGACATACATCTC 857 ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 778 ACATGGGCAGAAGAATTGGAACGTTGGTTGCCATCTTGTTTGCCTTCTGACGTACATCTC 837 Query 858 GTTTTCGGTCATCAAGATAATCCTGCCTATTTACCAAGATGGCCAAAAGTTGTGGTTATC 917 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GTATTCGGTCATCAAGATAATCCTGCCTATTTACCAAGATGGCCAAAAGTTGTGGTTATC 897 Query 918 TCATACAAGATGCTTCAGCATCTCCGGACGACCATGCTAGAGCGAGAATGGGCCCTCTTG 977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TCATACAAGATGCTTCAGCATCTCCGGACGACCATGCTAGAGCGAGAATGGGCCCTCTTG 957 Query 978 ATAGTAGATGAATCTCATCATCTACGGTGTTCGaaaaaaaaGTCAGATCCACCTGAGATA 1037 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 958 ATAGTAGATGAATCTCATCATCTACGATGTTCGAAAAAGAAGTCAGATCCACCTGAGATA 1017 Query 1038 AAGACAGTCCTTAATGTTGCTGAAAAGGTTAAGCACATAGTTCTGTTGTCAGGAACTCCT 1097 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1018 AAGACAGTCCTTGATGTTGCTGAAAAGGTTAAGCACATAATTCTGTTGTCAGGAACTCCT 1077 Query 1098 TCTATATCGAGGCCCTTCGACATTTTCCATCAGATAAACATCCTATGGCCTGGTTTGCTG 1157 ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1078 TCTGTATCGAGGCCCTTCGACATTTTCCATCAGATAAACATGCTATGGCCTGGTTTGCTG 1137 Query 1158 GGAAAAGACAAGTATGAGTTTGCGAAAACCTATTGTGAAGTTGGGCTTGTCAGAGGTATG 1217 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 GGAAAAGATAAGTATGAGTTTGCGAAAACCTATTGTGAAGTTGGGCTTGTCAGAGGTATC 1197 Query 1218 CAAGGGAAGATTTTCCAGGATTTTTCAAAGGGTACTCGCTTACTGGAGTTAAACATACTG 1277 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1198 CAAGGGAAGATTTTCCAGGATTTTTCCAAGGGTACTCGCTTACTGGAGTTAAACATACTG 1257 Query 1278 CTAAACCAAACAGTGATGATAAGAAGACTGAAACAGCATGTGTTAACACAGCTACCCCCA 1337 |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| Sbjct 1258 CTAAACCAAACAGTGATGATAAGAAGACTGAAGCAGCATTTGTTAACACAGTTACCCCCA 1317 Query 1338 AAACGTAGGCAAATCGTAACCATCTTGCTAAAGAAGTCTGATATATCTTTAGCAATGTCT 1397 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1318 AAACGTAGGCAAATCGTAACCATCTTGCTAAAGAAGTCTGATATAGCTTTAGCAATGGCT 1377 Query 1398 ATTGTCAGTGAGGCTAATCAGAAGGCTAATAAACAAAAGGATGGTGCTATAGCAGAAGTC 1457 |||||| | | | | ||||||| |||||||||||||||||||||||||||||| Sbjct 1378 ATTGTC----A-G-----C-G-AGGCTAAGAAACAAAAGGATGGTGCTATAGCAGAAGTC 1425 Query 1458 ACAGAGAACTCACATGAACCTAAAGATCAAAATGCTCAAGGATCAAATGAAGCTGGACAT 1517 |||||||| |||||||||||| || |||||||||| ||||||||||||||||||||| Sbjct 1426 ACAGAGAAGTCACATGAACCT---GACCAAAATGCTCGTGGATCAAATGAAGCTGGACAT 1482 Query 1518 GTAAATGCAGAGAATTCTGATGGTCCGAACTCTGACAGAGAGAATCAACTATGTGGGAAA 1577 ||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||| Sbjct 1483 GTAAACGCAGAGAATTCTGATGGCCCTAACTCTGACAAAGAGAATCAACTATGTGGGAAA 1542 Query 1578 CTTTCCTATCAACAACTTGGCATTGCAAAGCTTTCTGCCTTTCGTGAATGGTTATCCCTA 1637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1543 CTTTCCTATCAACAACTTGGCATTGCAAAGCTTTCTGCCTTTCGTGAATGGTTATCTCTA 1602 Query 1638 CATCCACTTCTATCAGGATTGGATTATACCCCAGAAGATATTGATGGAGACACG-AGCTC 1696 |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| Sbjct 1603 CATCCACTTCTATCAGGATTGGATTATACCCCAGAAGAAATTGATGGAGACA-GAAGCTC 1661 Query 1697 AACTAAAATGGTCGTTTTTGCTCATCACCATAAGGTTCTGGATGGAATTCAGGAATTTAT 1756 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1662 AACTAAAATGGTCGTTTTTGCACATCACCATAAGGTTCTGGATGGAATTCAGGAATTTAT 1721 Query 1757 ATGTGATAAAGGGATTGGTTTTGTTCGCATTGATGGGACGACGTTGCCAAGAGATAGACA 1816 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1722 ATGTGATAAAGGGATTGGTTTTGTTCGCATTGATGGGACGACATTGCCAAGAGATAGACA 1781 Query 1817 ATTGGCTGTACAGTCATTTCAGTTTTCTAGTGAGGTAAAAGTTGCAATAATTGGCGTAGA 1876 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1782 ATTGGCTGTACAGTCATTTCAGTTTTCTAGTGAGGTAAAAATTGCAATAATTGGTGTAGA 1841 Query 1877 AGCTGGAGGAGTTGGACTGGATTTTTCAGCAGCACAAAATGTTGTGTTCCTTGAATTACC 1936 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1842 AGCTGGAGGAGTTGGACTGGATTTTTCAGCAGCACAAAATGTTGTGTTCCTTGAATTGCC 1901 Query 1937 TAAAACACCGTCACTGTTGCTTCAGGCTGAGGATAGAGCACATAGGCGAGGCCAAACAAG 1996 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1902 TAAAACACCGTCTCTGTTGCTTCAGGCTGAGGATAGAGCACATAGGCGAGGCCAAACAAG 1961 Query 1997 TGCAGTCAATGTATACATCTTCTGCGCAAAGGATACTATGGACGAGTCAAATTGGCAAAA 2056 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1962 TGCAGTAAATGTATACATCTTCTGCGCGAAGGATACTATGGACGAGTCAAATTGGCAAAA 2021 Query 2057 CCTGAACAAGAAGTTGCACCGTATTTCATCTACCACTGATGGAAAATATGATGGGAAGAC 2116 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2022 TCTAAACAAGAAGTTGCACCGTATTTCATCTACCACTGATGGAAAATATGATGGGAAGAC 2081 Query 2117 CGAAATCGAAATTGAAAGAGCATATATTTTCAAGCCTGCTGAAGAAAGCAGTGAAAGAGA 2176 ||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 2082 TGAAATCGAAATTGGAGGAGCATCTATTTTCAAGCCTGCTGAAGAAAGCAGTGAAAGAGA 2141 Query 2177 AGTTCTTGAAGCACAACCATCAAAAGCTAATACTGTAGTAGCTGATAAGATTGTTGAAAG 2236 ||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 2142 AGTTCTTGAAGGGCAACCATCAGAATCAAATACTGTAGTAGCTGATAAGATTGTTGAAAG 2201 Query 2237 CTGTGACGATCTGGGATCTGAGACAGATGTATCAAATAGTATTGATCTCAAGGACGACAT 2296 ||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 2202 CTGTGACGATCCGGGAACTGAGACAGATGTGTCAAATACTATTGATCTCAAGGACGACAT 2261 Query 2297 GACTTCTCA-TCTGGAAATATTAGAAGTCTGTAAATTTGTTGAGAATGGTTCCGGCTCTG 2355 ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2262 GACTTCTCAAT-TGGAAATATTAGAAGTCTGTCCTTTTGTTGAGAATGGTTCCGGCTCTG 2320 Query 2356 AG-ATGAGATCTTCTGGCACCATTTGTTTAACTATGTTAGACCAGGAAAACCAAGAAAAT 2414 | ||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||| Sbjct 2321 -GCATGAGGTCTTCTGGCACCATTTCTTTGACTATGTTAGCCCAGGAAAACCAAGAAAAT 2379 Query 2415 CATCAGCCTAAAAATCTTATTGCTGATGACGGGCTTGTGAAAGAATTTGATTCCAGTTCC 2474 ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 2380 CATAAGCCTAAAAATCTTATTGCTGATGATGGGCTTGTGAAAGAAGTTGATTCCAGTTCC 2439 Query 2475 ATTTTTCCACTCATAGATTCTCTCAGATTTGAGGTGAGCCAAAACACTGGAAGAATTCAT 2534 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2440 ATTTTTCCACTCATAGATTCTCTGAGATTTGAGGTGAGCCAAAACACTGGAAGAATTCAT 2499 Query 2535 TTATACTCTTGCATTCTTGGGAAAGATCCACGACCAAGGCCTCATTTCCAGAACTTCCGC 2594 |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| Sbjct 2500 TTATACTCTTGCATTCCTGGGAAAGATCCAAGACCAAGGCCTCATTTCCAAAACTTCCGT 2559 Query 2595 CCAGAGGAGATTGAAGCAAGCAATACAAGTCAGGGTCCCAATAAAGaaaaaaaTCCTGAA 2654 |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| Sbjct 2560 CCAGAGGAGATTGAAGCAAGCAATCCAAGTCAGGGTACCACGAAAGAAAAAAATCCTGAA 2619 Query 2655 TCCATTACAGATGATCCGGTTCATGTACTTGCTATCTTAGAATTTATGAAAGAGTGGAAA 2714 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2620 TCCATTACGGATGACCCGGTTCATGTACTTGCTATCTTAGAATTTATGAAAGAGTGGAAA 2679 Query 2715 TCACTACGGCCAATCGAAAAGCGGAAACTACTTGGAAAGCCTTTGCAACTACCTTTATCA 2774 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2680 TCGCTACGGCCAATCGAAAAGCGGAAACTACTTGGAAAGCCTTTGCAACTACCTTTATCA 2739 Query 2775 CTGGAGTTGAGCTACTTGAGTGAAAGTACTAGTCACAACAACGAGGGATTGCTTAGGGGA 2834 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2740 CTGGAGTTGAGCTACCTGAGTGAAAGTACTAGTCACAACAGCGAGGGATTGCTTAGGGGA 2799 Query 2835 GGGAGCAAAAGACGAAACACACCCTTTTCTGAGATCAGTATTCCTGTACCTGAAAATGCA 2894 ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| Sbjct 2800 GGGAGCAAAAGACGAAACACACCGTTTTCTGAGATCAGCATTCCTTTACCTGAAAATGCA 2859 Query 2895 GTGTGGAAAAAGGTCAACCTTCGAAGTGGCCACCAAAGAAAGGAAAAAGAATACACCCAA 2954 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2860 GTGTGGATAAAGGTCAACCTTCGAAGTGGTCACCAAAGAAAGGAAAAAGAATACACCCAA 2919 Query 2955 GCTTGGAGTATGAGCAACGAACCACTCTGTAAACTCTGTCAAAAGCCCTGCAAGGGAAAC 3014 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 2920 GCTTGGAGTATGAGCAACGAACCACTCTGTAAACTCTGTCAAAAGCCCTGCGCGGGATAC 2979 Query 3015 AACGCCAAAGAACCTGAGTATTTTGAGGATCTTTTCTGTGATCTTGCATGCTATGAAGAT 3074 ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 2980 AACGCCAAAGAGCCTGAGTATTTAGAGGATCTTTTCTGTGAGCTTGCATGCTATGAAGAC 3039 Query 3075 TACCGGACGAGAACAAGCAGCAGATACATTCGCCAGATAGAACATGGAATTTGCACAAAC 3134 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3040 TACCGGACAAGAACAAGCAGCAGATACATTCGCCAGATAGAACATGGAATTTGCACAAAC 3099 Query 3135 TGCGAATTAGACTGCCACCAACTTGTCAGACGGTTAAGGCCTTTACCATTGGAAAAACGC 3194 ||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 3100 TGCAAATTAGACTGCCACCAACTTGTCAAACGGTTAAGGCCTTTACCACTGGAAAAACGA 3159 Query 3195 CGTACATACATAAACAAAGTTGCTCCAGAATTGTTTGCGCGGAAGAACCTGCTCGAAACC 3254 ||||||||||||||||||| |||||||||||||||||| ||||||||| |||| |||||| Sbjct 3160 CGTACATACATAAACAAAGCTGCTCCAGAATTGTTTGCCCGGAAGAACTTGCTTGAAACC 3219 Query 3255 CTGGTTAATGATCCAACTGAGGGTAATGCTTGGCATGCGGATCATATCATTCCAGTCTAC 3314 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 3220 CTGGTTAATGATCCAACGGAGGGAAATGCATGGCATGCGGATCATATCATTCCAGTCTAC 3279 Query 3315 CAAGGCGGAGGTGAATGCCGGCTAGAGAACATGAGGACACTTTGTGTGGCTTGTCATGCC 3374 ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 3280 CAAGGCGGAGGCGAGTGCCGGCTAGAGAACATGAGGACACTATGTGTGGCTTGCCATGCC 3339 Query 3375 AATGTCACTGCAGCTCAATGCGGAGAACGTAAACTGATACGGTCCAAAGCCAGGAAGCAA 3434 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 3340 GATGTCACTGCAGCTCAATGTGCAGAACGTAAACTGATACGGTCCAAAGCCAGGAAGCAA 3399 Query 3435 CTCAAAAACACTTTAAACGAACTCAGAAACAATCCAAAGCAAACAGAACTGC-CGGCTGA 3493 ||||||||||||||||||||||||||||||||||| ||||||| ||| || | ||||||| Sbjct 3400 CTCAAAAACACTTTAAACGAACTCAGAAACAATCCGAAGCAAAAAGATCT-CTCGGCTGA 3458 Query 3494 AG-GCAACACAAAGGAGACTGATTCAGCTACCGATGAAGAGGAAGATGAGCTAATGGTTG 3552 | | ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| Sbjct 3459 CGAG-AACACAAAGGAGACTGATTCAGCTACCAATGAAGAGGAAGATGAACTAATGATTG 3517 Query 3553 AAGTTCCTGGTAGTGCCTACTCCATAGATCAGAAAATCAGTCATG---CCGCATAAAACT 3609 ||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||| Sbjct 3518 AAGTTCCTGGTAGTGCCTACTCCATAGATCAGAAAATCAATCATGATGCCTCATAGAACT 3577 Query 3610 CATTTTTTGACTTGTC 3625 |||||||||||||||| Sbjct 3578 CATTTTTTGACTTGTC 3593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 180500660914 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5