BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940266
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |... 859 0.0
AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-li... 228 1e-58
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A ... 202 6e-51
> AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B
| chr5:2572107-2574879 FORWARD LENGTH=1815
Length=1815
Score = 859 bits (465), Expect = 0.0
Identities = 555/596 (93%), Gaps = 16/596 (3%)
Strand=Plus/Plus
Query 503 ATTTTCAAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 562
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ATTCTCCAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 1216
Query 563 TGTCTGCTATTGGCTCTGGAATGGGTTCTTCTGCCAACAATGGATCAAGATCCATGTATT 622
||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct 1217 TGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACGGATCAAGATCCATGTATT 1276
Query 623 CTGACAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTTTAGGTGAGGAGAAGCCTG 682
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1277 CTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTTTAGGCGAGGAGAAGCCTG 1336
Query 683 TATTCTTTAGTACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAGACAATGTGGTACC 742
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1337 TATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAAACAATGTGGTACC 1396
Query 743 GTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAAGCAATGGACTCTGGTTATTGGTGTG 802
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1397 GTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGGACTCTGGTTATTGGTGTG 1456
Query 803 AAGGTTGTCTGAAAAAGGATCAAGAATGCAGCTTAAGGTATATAATGGCGGTGAAAGTCT 862
|| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1457 AAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATATAATGGCGGTGAAAGTCT 1516
Query 863 CTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATGAAGCAGAGAAGATTATTG 922
| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1517 CCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATGAAGCAGAGAAGATTATCG 1576
Query 923 GCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 982
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1577 GCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 1636
Query 983 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGT-------A-- 1033
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1637 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGTGTTTCTCAGC 1696
Query 1034 -----TA-A-CAGTAAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1082
|| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 AAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1752
Score = 252 bits (136), Expect = 6e-66
Identities = 155/164 (95%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 349 GATGATCAC-AAGAGGGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 407
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GATGATCCCAAAGAGAGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 1004
Query 408 CCTTTGGAATGATCTAGCAACTGGCATAGGCCATGAACTGCTAGACATGGCTGATAATCA 467
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1005 CCTTTGGAATGATCTAGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCA 1064
Query 468 CCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAG 511
|||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 1065 CCCTGTTATCGCGATTAAATCTCTTAAAGTTGGAGCTTTTCAAG 1108
> AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr3:5047400-5049877 FORWARD LENGTH=1545
Length=1545
Score = 228 bits (123), Expect = 1e-58
Identities = 137/144 (95%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 206 TGGTAAACAAACAAGACTCCAATGGACGACTTAACGCAGCTATCTGTTGTGCTCCTGCGT 265
|||| || ||||||||||| |||| ||||||||||||||||| |||||||||||||| |
Sbjct 385 TGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGCAGCTATATGTTGTGCTCCTGCCT 444
Query 266 TGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCCTGTTTTTA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCCTGTTTTTA 504
Query 326 TGGAGAAACTTGCGGCTACTTGTG 349
||||||||||||||||||||||||
Sbjct 505 TGGAGAAACTTGCGGCTACTTGTG 528
> AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
protein 1-related | chr5:24549578-24552723 REVERSE LENGTH=2076
Length=2076
Score = 202 bits (109), Expect = 6e-51
Identities = 148/166 (89%), Gaps = 5/166 (3%)
Strand=Plus/Plus
Query 349 GATGA-TCAC-AAGAGGGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGT 406
||||| || | ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1099 GATGATTC-CTAAGAGGGATATAACTTTGGCTGATGAGTCAAGGAAAACTGTTGTGGTGT 1157
Query 407 CCCTTTGGAATGATCTAGCAACTGGCATAGGCCATGAACTGCTAGACATGGCTGAT-AAT 465
|||| ||||||||||| |||||||||||||| || || || ||||||||||||||| | |
Sbjct 1158 CCCTGTGGAATGATCTTGCAACTGGCATAGGTCAGGAGCTACTAGACATGGCTGATCAGT 1217
Query 466 CACCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAG 511
|| ||||| || || || ||||||||||||||||||||||||||||
Sbjct 1218 CA-CCTGTGATTGCAATCAAGTCTCTCAAAGTTGGAGATTTTCAAG 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5