BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940271
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08100.1 | Symbols: | N-terminal nucleophile aminohydrolase... 1594 0.0
> AT5G08100.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr5:2593050-2594651
REVERSE LENGTH=1205
Length=1205
Score = 1594 bits (863), Expect = 0.0
Identities = 946/987 (96%), Gaps = 2/987 (0%)
Strand=Plus/Plus
Query 8 GTTATCCGGCGGGCGATGGTGGGGTGGGCGATAGCGCTACACGGCGGCGCTGGAGATATT 67
||||| |||||| |||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 51 GTTATACGGCGGAAGATGGTGGGGTGGGCGATTGCGCTACACGGCGGTGCCGGAGACATT 110
Query 68 CCGATCGATCTCCCTGACGAGAGACGTATCCCTCGTGAGACCGCCCTCCGACACTGCCTC 127
|||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 111 CCGATCGATCTCCCCGACGAGCGACGTATCCCTCGTGAGAGCGCCCTCCGTCACTGCCTC 170
Query 128 GATCTTGGCGTCTCCGCCCTCAAATCCGGCAAGCCTCCCTTGGACGTCGCCGAACTCGTC 187
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 171 GATCTTGGCATCTCCGCCCTCAAATCCGGCAAGCCTCCCTTGGACGTCGCCGAACTTGTC 230
Query 188 GTTCGTGAACTTGAAAACCACCCGGACTTCAATGCGGGTAAAGGATCTGTCTTAACTACA 247
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 231 GTTCGTGAACTTGAGAACCACCCGGACTTCAATGCGGGTAAAGGATCTGTCTTAACTGCA 290
Query 248 CAAGGCACTGTTGAAATGGAAGCTTCTATTATGGACGGTAATACCAAAAGATGTGGAGCT 307
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 291 CAAGGCACTGTTGAAATGGAAGCTTCCATTATGGACGGTAAAACCAAAAGATGTGGAGCT 350
Query 308 GTCTCCGGCTTGACCACTGTTGTTAATCCGGTATCTTTAGCTCGCCTCGTCATGGAGAAA 367
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 351 GTCTCCGGCTTGACCACTGTTGTTAATCCCATTTCTTTAGCTCGCCTCGTCATGGAGAAA 410
Query 368 ACGCCTCATATATATCTTGCATTCGATGCTGCTGAAGCTTTTGCAAGAGCACATGGCGTT 427
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 411 ACTCCTCATATATATCTTGCATTCGATGCTGCTGAAGCTTTTGCAAGAGCACATGGTGTT 470
Query 428 GAGACGGTCGATTCTAGCCATTTCATTACTCCTGAAAACATTGCTAGGCTAAAGCAGGCC 487
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 471 GAGACGGTAGATTCTAGCCATTTCATAACTCCTGAAAACATTGCAAGGCTAAAGCAGGCC 530
Query 488 AAAGAATTCAATCGAGTCCAGTTGGATTACACAGTCCCTACTCCGAAAGTACCGGACAAT 547
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 531 AAAGAATTCAATCGAGTCCAGTTGGATTACACAGTCCCTAGTCCGAAAGTACCGGACAAT 590
Query 548 TGCGGTGACAGCCAAATAGGAACGGTCGGATGTGTAGCTGTGGACAGTGCTGGAAATCTA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGCGGTGACAGCCAAATAGGAACGGTCGGATGTGTAGCTGTGGACAGTGCTGGAAATCTA 650
Query 608 GCTTCGGCTACATCAACGGGCGGTTATGTCAACAAAATGGTTGGCAGAATTGGGGATACG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GCTTCGGCTACATCAACGGGCGGTTATGTCAACAAAATGGTTGGCAGAATTGGGGATACG 710
Query 668 CCTGTCATTGGCGCAGGAACATACGCTAACCACCTTTGTGCCATCTCAGCCACAGGTAAA 727
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 711 CCAGTCATTGGCGCAGGAACTTACGCTAACCACCTTTGTGCCATCTCAGCCACAGGTAAA 770
Query 728 GGAGAAGAGATCATCCGTGGAACCGTGGCTAGAGACGTGGCTGCACTCATGGAGTATAAA 787
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 771 GGAGAGGATATCATCCGTGGAACCGTGGCTAGAGACGTGGCTGCACTCATGGAATATAAA 830
Query 788 GGCTTGTCTTTGACCAAGGCAGCGGCTTATGTTGTTAACCAATCTGTTCCCAGAGGAAGC 847
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 831 GGCTTGTCTTTGACTGAGGCAGCGGCTTATGTTGTTGACCAATCTGTTCCCAGAGGAAGC 890
Query 848 TGTGGACTCGTTGCTGTCTCTGCCAATGGTGAAGTCACAATGCCGTTTAACACTACTGGT 907
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 891 TGTGGACTCGTTGCTGTCTCTGCCAATGGTGAAGTCACAATGCCGTTTAACACTACCGGA 950
Query 908 ATGTTCAGGGCTTGTGCTACCGAAGATGGTTACTCTGAGATCGCTATCTGGCCAAACAAT 967
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 951 ATGTTCAGGGCTTGTGCTAGCGAAGATGGTTACTCTGAGATCGCAATCTGGCCAAACAAT 1010
Query 968 TGAAATCACTAGACGGAAG-AGTGGCT 993
||||||||||||||| ||| | |||||
Sbjct 1011 TGAAATCACTAGACG-AAGGAATGGCT 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5