BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940275
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08130.5 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA... 2320 0.0
> AT5G08130.5 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:2606200-2610250 REVERSE
LENGTH=2553
Length=2553
Score = 2320 bits (1256), Expect = 0.0
Identities = 1554/1686 (92%), Gaps = 68/1686 (4%)
Strand=Plus/Plus
Query 1 AACCGTCGAAG--CTGTCGTTCATGGAGCTTCCTCAACCTCGACCCTTCAAAA--C---- 52
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 478 AACCGTCGAAGCTCTGTCGTTCATGGAGCTTCCTCAACCTCGTCCCTTCAAAACCCAAGA 537
Query 53 ----CG-A-AGGGAGAAAACCAACACATGATTTTTTATCGCTCTGCAGTCATTCAACCGT 106
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATTTCGCACAGGGAGAAAACCAACACATGATTTTTTATCGCTCTGCAGTCATTCAACCGT 597
Query 107 CCACCCAGATCCAAAGCC-A-A-CACCACCTTCTTCTCAAGGTGGTCACTTGAAAACCCA 163
|||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||
Sbjct 598 CCACCCAGATCCAAAGCCAACACCACCACCTTCTTCTCAAGGTAGTCACTTGAAAACCCA 657
Query 164 TGATTTTCTTCAACCGCTT-GAATGTGTTGCTGCTAAAGAAGAGGTAAGTAGGATTAACA 222
|||||||||||||||| || |||||||||| |||||||||||| |||||||||||||||
Sbjct 658 TGATTTTCTTCAACCG-TTAGAATGTGTTGGTGCTAAAGAAGACGTAAGTAGGATTAACT 716
Query 223 CTACCACTACAGCTTCCGAGAAGCCACCGCCCCCTGCACCTCCTCCACCGCTGCAGCACG 282
||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 717 CTACCACTACAGCGTCCGAGAAGCCACCGCCCCCTGCTCCACCTCCACCGTTGCAGCACG 776
Query 283 TGCTTCCCGGTGGTATAGGGACTTATACAATAAGCCCCATTCCTTACTTCCATCATCATC 342
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 777 TGCTTCCCGGTGGTATAGGGACTTATACGATTAGCCCCATTCCTTACTTCCATCATCATC 836
Query 343 ATCAGAGAATTCCTAAGCCGGAGTTGTCACCACCGATGATGTTCAATGCTGCTGCGCAAG 402
|||||||||||||||||||||||||||||||||| | ||| ||| | | | |
Sbjct 837 ATCAGAGAATTCCTAAGCCGGAGTTGTCACCACC-A--ATG----ATG-T--T---C-A- 881
Query 403 CGAGTGGCGGTAATGAGAGAAATATTGTCGATGAGAATTCAAACTCTAATTGCAGCTCAT 462
| | || |||||||||||| || | ||||||||||| ||||||||||||||||| |
Sbjct 882 --A-T-GC--TAATGAGAGAAACGTTTTGGATGAGAATTCTAACTCTAATTGCAGCTCGT 935
Query 463 ACGCCGCTGCAGCTAGCGGGTTCACTCTGTGGGATGAATCTGCTTCAGGGAAGAAGGGAC 522
||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 936 ACGCCGCTGCATCAAGCGGGTTCACTCTGTGGGATGAATCTGCTTCTGGGAAGAAGGGAC 995
Query 523 AGACAAGGAAGGAGAATAATGTTGGGGAGAGAGTAAACATGAGAGCTGATGTTGCAGCAA 582
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 996 AGACAAGGAAGGAGAATAGTGTTGGGGAGAGAGTAAACATGAGAGCTGATGTTGCAGCAA 1055
Query 583 CTGTGGGACAATGGCCAGTGGTGGA-ACGACGGTCTCAGTCGTTGACAAATAACCATATG 641
||||||||||||||||||||| ||| | ||||||| ||||| |||||||| |||||||||
Sbjct 1056 CTGTGGGACAATGGCCAGTGGCGGAGA-GACGGTCCCAGTCTTTGACAAACAACCATATG 1114
Query 642 AGCGGTTTCAGTTCTCGCTCTTCCTCTCAAGGATCTGGGCTTAAGAGCCAGAGCTTCATG 701
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1115 AGCGGTTTCAGTTCTCTCTCTTCCTCTCAAGGGTCTGTGCTTAAGAGCCAGAGCTTCATG 1174
Query 702 GACATGATAAGGTCAGCAAAAGGAAGTTCACAGGACGATGACTTAGATGATGAAGAAGAT 761
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1175 GACATGATAAGGTCAGCAAAAGGAAGTTCACAGGAAGATGATTTAGATGATGAAGAAGAT 1234
Query 762 TTTATCATGAAGAAAGAAAGCTCCTCGACTAGTCAGAGCCATAGAGTGGATTTGAGGGTT 821
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1235 TTTATCATGAAGAAAGAAAGCTCCTCGACTAGCCAGAGCCATAGAGTGGATTTGAGGGTA 1294
Query 822 AAAGCAGATGTGAGAGGCTCTGCTAACGATCAAAAGCTGAACACACCTAGGTCTAAACAT 881
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AAAGCAGATGTGAGAGGCTCTCCTAACGATCAAAAGCTGAACACACCTAGGTCTAAACAT 1354
Query 882 TCTGCTACAGAGCAACGGAGGAGGAGCAAGATCAATGATAGATTTCAAATGTTGAGACAA 941
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1355 TCTGCTACAGAGCAACGGAGAAGGAGCAAGATCAATGATAGATTTCAGATGTTGAGACAA 1414
Query 942 CTAATACCTAACAGCGACCAAAAGCGGGATAAGGCCTCTTTCTTACTAGAGGTTATCGAG 1001
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1415 CTAATACCTAACAGCGACCAAAAGCGGGATAAGGCCTCCTTCTTACTAGAGGTTATCGAG 1474
Query 1002 TATATTCAATTCTTACAAGAGAAAGCAGACAAGTATGAGACCTCTTACCAAGGATGGAAT 1061
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1475 TATATTCAATTCTTACAAGAGAAAGCAGACAAGTATGTGACCTCTTACCAAGGATGGAAT 1534
Query 1062 CACGAACCTGCGAAGCTATTGAATTGGCAG-AGTAACAACCAACAGCTAGTACCTGAAGG 1120
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 1535 CACGAACCTGCGAAGCTATTGAATTGG-AGTAACAACAACCAACAGCTAGTACCTGAAGG 1593
Query 1121 AGTTGCTTTTGCTCCAAAAATGGAAGAAGAGAAGAACAACATTCCGGTTTCGGTCCTTGC 1180
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1594 AGTTGCTTTTGCTCCAAAATTGGAAGAAGAGAAAAACAACATTCCGGTTTCGGTCCTTGC 1653
Query 1181 AACAGCACAAAGTGTTGTTATCGATCATCCAACAACCGCAACGACCTCTCCATTTCCCTT 1240
||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1654 AACTGCACAAGGTGTTGTTATTGATCATCCAACAACCGCGACGACCTCTCCATTTCCATT 1713
Query 1241 GTCGATCCAAAGCAACAGTTTTTTCTCTCCTGTGATTGCGGGTAATCCCGTACCTCAGTT 1300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1714 GTCGATTCAAAGCAACAGTTTTTTCTCTCCTGTGATTGCGGGTAATCCCGTACCCCAGTT 1773
Query 1301 CCACACAAGAGTCACATCATCAGAGACTGTAGAGCCAAGCCCGAGTTCTCGGAATCAAAC 1360
|||| |||||||| ||||||||||| ||||||||||||| |||||||| |||| |||||
Sbjct 1774 CCACGCAAGAGTCGCATCATCAGAGGCTGTAGAGCCAAGTCCGAGTTCCCGGAGTCAAA- 1832
Query 1361 TCAGCCATTgaaagaagaagaagaagtagaagaTGAGGAAGATCTTGAGGGTAACATTAG 1420
| | ||| |||||||| || | |||| | ||||||||||||||| ||
Sbjct 1833 --A---A--GAA-GAAGAAGATGA-G--GAAG-T--------TCTTGAGGGTAACATCAG 1872
Query 1421 AATTTCAAGTGTTTACTCGCAAGGATTAGTGAAAACACTGAGAGAAGCATTGGAGAATTC 1480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 AATTTCAAGTGTTTACTCACAAGGATTAGTGAAAACACTGAGAGAAGCATTGGAGAATTC 1932
Query 1481 AGGAGTGGACTTAACGAAAGCAAGCATCTCCGTTGAAATTGAGCTCGCTAAACAATCCTC 1540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1933 AGGAGTGGACTTAACGAAAGCAAGCATCTCCGTTGAAATCGAGCTCGCTAAACAATCCTC 1992
Query 1541 GTCTTC--C-TTCAAGGGTCGTGAAGTTCGTGAACCGGTCTCTCGAACCAGAAACGACGA 1597
|||||| | ||||||| || |||||||||||||||||| |||||||||||||||||| |
Sbjct 1993 GTCTTCTTCCTTCAAGGATCATGAAGTTCGTGAACCGGTTTCTCGAACCAGAAACGACAA 2052
Query 1598 TGTTAAGCAAACTCGGAAACCAAAACGGCTCAAGACGGGACAATAGAAGTTATAAAAACA 1657
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2053 TGTCAAGCAAACTCGGAAACCAAAACGGCTCAAGACGGGACAGTAGAAGTTATAAAAACA 2112
Query 1658 AAACCC 1663
||||||
Sbjct 2113 AAACCC 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82178292165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5