BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940276
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08139.1 | Symbols: | RING/U-box superfamily protein | chr5... 1533 0.0
> AT5G08139.1 | Symbols: | RING/U-box superfamily protein | chr5:2616345-2617881
FORWARD LENGTH=1537
Length=1537
Score = 1533 bits (830), Expect = 0.0
Identities = 1097/1217 (90%), Gaps = 54/1217 (4%)
Strand=Plus/Plus
Query 1 TCTCTCGATCTTCTCTAGCTCTGTCAT-G--GATCTGTTACACCAGCGAGGT-GAGCAGA 56
||||||||||||||||| || |||||| | |||||||||||||||||| || ||||||
Sbjct 118 TCTCTCGATCTTCTCTATCTTTGTCATGGATGATCTGTTACACCAGCGA-GTCGAGCAGT 176
Query 57 CTGAGGTAACTTCTCCTCATGACGATATTAATAATATCCATGGTGATTTTGATAACGAGG 116
|| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 177 CTCAGGTAACTCCTCCTCATGACG--ATT-CTAATATCCATGGTGATTTTGATAACGAGG 233
Query 117 CTACGGATGAATCGCGATCAGAATCTTGTTCTGTTGTGATAGAGGGAAATTGCGACATGG 176
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 234 CTACGGATGAATCGCGATCCGAAACTTGTTCTGTTGTGATAGAGGGAAACTGCGACATGG 293
Query 177 TTATTGAATTAGGGTTGGAATCTGGAAGTGTTCTTGTTGAGAATTTAGGTGATAATGATA 236
| ||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 294 TGATTGAATTAGGATTGGAATCTGGAAGTGTTATCGTTGAGAATTTAGGTGATAGTGATA 353
Query 237 TTGATGTTAGTAATGATTTTGATGAACCTGATGACGACGATTTCTTTGTTGGGAGGAGTG 296
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 354 TTGATGTTAGCAATGATTTTGATGAACCTGATGACGACGATTTCTTTGTGGGGAGGACTG 413
Query 297 ATTTTGGGCTCGAGTTTCGCGATATCGCATCGAT-GGGGACTGATATCCGGTTGATTACA 355
|||||||||||||||| |||||||| ||||| | ||||| ||||||| ||||||||||
Sbjct 414 ATTTTGGGCTCGAGTTCCGCGATATTGCATC-TTCGGGGAATGATATCAGGTTGATTACG 472
Query 356 GTGGGATCGGGTTCtgatgatgatgatgatgatgGTCTCGAGAATGAGAGGGAATTATGG 415
|||| ||||||||| | ||||||||||||| | || | |||||||||||||||||||||
Sbjct 473 GTGGAATCGGGTTC--A-GATGATGATGATGGT-GT-T-GAGAATGAGAGGGAATTATGG 526
Query 416 GGgattgatctgaatgaagaagatgtatatgtgaatgatgctgatgaatatgaagatgac 475
||||||||||||||||||||||||||||||||| | | ||||| || |||||
Sbjct 527 GGGATTGATCTGAATGAAGAAGATGTATATGTG-A--A---TGATG---AT---GATGA- 573
Query 476 gatgatgatgatgatgatgatgTTAGTGTGACTATCCCTCTTTGTTGGGATTCACTCCAA 535
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 -AT-ATGA--A-GATGATGATGTTAGTGTGACTATCCCTCTTTGTTGGGATTCACTCCAA 628
Query 536 TTAGAAGATCGTGGAG-TAACTGCTGATGAATTTGATTGGGAGGAAGTTGATGGTGGTGG 594
||||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 629 TTAGAAGATCGTG-AGGTAACTGCTGATGAATTTGATTGGGAAGAAGTTGGTGGTGGTGG 687
Query 595 TGG---CG---TGGAGGATGAGAGAGAGATACGAAGTGGCTTTGCACAAGTTGATATCAA 648
||| || |||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 688 TGGTGGCGGCGTGGATGATGAGAGAGAGATACGAAGTGGCTTTGCACAAATTGATATGAA 747
Query 649 TGACGAAAGTTCTGTTTCGATTTCTGTCT-CGCCAATTATCTCCTTAGAGGATTTAGTGA 707
||||||||||| || ||||||| || ||||||||||||| ||||||| ||||||||
Sbjct 748 TGACGAAAGTT-TG-----ATTTCTG-CTTCGCCAATTATCTCTTTAGAGGGTTTAGTGA 800
Query 708 CAAGGGAAAGAGCAGAAGGCTCGGGAAATCTCGGGTGGGAAGTTTTGCTGAATCATACTC 767
|||||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||
Sbjct 801 CAAGGGAAAGAGCAGAGGGTTCGGGAAATCTAGGGTGGGAAGTTTTACTGAATCACACTC 860
Query 768 TTGAGATCAACTTTGATGTGGAAAACAGAGAGCTGTATATTGGTGGTGATCATGACGATT 827
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 861 TAGAGATCAACTTTGATGTGGATAACAGAGAGCTGTACATTGGTGGTGATCATGACGATT 920
Query 828 ATATTCAAGAGTATGAGATGTTGTTTGAACAGTTTGCCGATGCTGAGATTTCCGTTATCG 887
|| ||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| |
Sbjct 921 ATGTTCAAGACTATGATATGTTGTTTGAACAGTTTGCCGATGCTGAGGTATCCGTTATTG 980
Query 888 GTTTACCTCCTACTTCCAAATCTTTCCTCAAGAGTCTCCCTA-TGGTTCGAATTGAAGGT 946
|||||||||| |||||||||||||| ||||| | |||||| | |||||| | | ||||||
Sbjct 981 GTTTACCTCCGACTTCCAAATCTTTTCTCAACAATCTCCC-AGTGGTTCTACTAGAAGGT 1039
Query 947 GAGATCGATGATGATGATGGTGTGGTTTGTGCAGTTTGTAAAGATGAGATGAATATCGGG 1006
|||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1040 GAGAACGATGATGATGGTGGTTTGGTTTGTGCAGTTTGTAAAGATGAGATGAATATCGGA 1099
Query 1007 AACGAAGCTGTTCAATTGCCTTGTAATCATAAGTACCATAGTGAATGCATTGTACCGTGG 1066
||| |||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1100 AACAAAGCGGTTCAACTGCCATGTAATCATAAGTACCATAGCGAATGCATTGTACCGTGG 1159
Query 1067 CTCAAAGTAAGGAACACATGTCCTGTTTGTCGTTATGAACTGCCTACTGATGATGCAGAG 1126
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1160 CTCAAAGTAAGGAACACATGTCCTGTTTGTCGTTATGAGTTGCCTACAGATGATGCAGAG 1219
Query 1127 TATGAGCAAAGGAAGA-TCCAGAGAACAACAAATACTTTTGGCATGGTTCTGTAAATGGT 1185
|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TATGAGCAGAGGAAGACTC-AGAGAACAACAAATACTTTTGGCATGGTTCTGTAAATGGT 1278
Query 1186 AAACATCATCCTCGATA 1202
|||||||||||||||||
Sbjct 1279 AAACATCATCCTCGATA 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5