BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940278

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08150.1 | Symbols: SOB5 | suppressor of phytochrome b 5 | c...   658    0.0  


> AT5G08150.1 | Symbols: SOB5 | suppressor of phytochrome b 5 | 
chr5:2622030-2622720 REVERSE LENGTH=691
Length=691

 Score =  658 bits (356),  Expect = 0.0
 Identities = 426/458 (93%), Gaps = 12/458 (3%)
 Strand=Plus/Plus

Query  18   AAAATGGAGTCAGCAAACATCTTTGGATCCGATGAGGATGGTCGTAGCTGTGAATCTGGA  77
            ||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct  120  AAAATGGAGTCTGCAAACATCTTTGGATCCGATGAGGATTGTCGCAGCTGTGAATCTGGA  179

Query  78   TGGACGATGTATTTAGCCTCGCAGTCCCATGATCATGACGACGACTGTTACTATGATGAT  137
            |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||
Sbjct  180  TGGACGATGTATTTAGCCTCACAGTCCCATGATCGTGACGACGATTGTTACTATGGTGAT  239

Query  138  GATGACGAAGAAGCAGAAGATAGCGATGGTGGTGATTCAATGGATTCCGATGCATCTTCT  197
            ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  240  GATGATGAAGAAGAAGAAGATAGCGATGGTGGTGATTCAATGGATTCTGATGCATCTTCT  299

Query  198  GGTCCAATGGAAGCCACATCATCTCTCAAACTTGCGCAAGAGATTGAGGAGCAAAACTCT  257
            ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct  300  GGTCCCATGGAAGCCACATCATATCTCAAACTTGCTCAAGAGATTGAGGAGCAAAACTCT  359

Query  258  ATAAAGAAGAAGAAGAAAAGGACTAATGAAGAGATGGTTTTGGTGGAGACTACTAGGGTT  317
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  360  ATAAAGAAGAAGAAGAAAAAGACTAATGAAGAGATGGTTTTGGTGGAGACTACTAGGGTT  419

Query  318  CACAACACCAT----CAT--tgatgatgacgatga---cga---tgatggggataatcat  365
            ||||||| |||    |||  ||||||||| |||||   |||   ||||||||||||||||
Sbjct  420  CACAACAACATTAATCATGATGATGATGATGATGATGACGAAGATGATGGGGATAATCAT  479

Query  366  gattatgatgatggtaatgatAGCTACAGTGTAGTTCATAGCTACGTTGGTTCAGTTATA  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct  480  GATTATGATGATGGTAATGATAGCTACAGTGTAGTTCATAGCTACGTTGGTTCGGTTAGA  539

Query  426  CAAAAAGGGTTAGTTTGATTTTATATAGTGACTTTGTG  463
            ||||||||||||||||||||||||||| ||| ||||||
Sbjct  540  CAAAAAGGGTTAGTTTGATTTTATATAATGATTTTGTG  577



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5