BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940281

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08180.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   778    0.0  


> AT5G08180.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr5:2631654-2633455 REVERSE LENGTH=741
Length=741

 Score =  778 bits (421),  Expect = 0.0
 Identities = 467/490 (95%), Gaps = 0/490 (0%)
 Strand=Plus/Plus

Query  18   AAATATGGGAAGCGATACCGAAGCAGAGAAGTCGATTCAAAAGGAGAAGAAGAAGTTCGC  77
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  78   AAATATGGGAAGCGATACCGAAGCAGAGAAGTCGATTCAAAAGGAGAAGAAGAAGTACGC  137

Query  78   TATTTCTCTTGCTCCTATCGCTAAACCTCTTGCCGGCAAAAAACTCCAGAAGAGAACTTT  137
            |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  138  TATTACTCTTGCTCCTATCGCTAAACCTCTCGCCGGCAAAAAACTCCAGAAGAGAACTTT  197

Query  138  CAAACTCATTCAAAAAGCTGCTGGGAAGAAATGTTTAAAGAGAGGAGTTAAAGAAGTGGT  197
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  198  CAAACTCATTCAAAAAGCTGCTGGGAAGAAATGTTTGAAGAGAGGAGTTAAAGAAGTGGT  257

Query  198  TAAGAGCATAAGACGTGGCCAGAAAGGATTATGTGTTATAGCTGGAAACATATCACCCAT  257
            ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct  258  TAAGAGCATAAGACGAGGCCAGAAAGGATTATGTGTAATAGCTGGAAACATTTCACCTAT  317

Query  258  TGATGTGATTACGCATCTTCCAATCTTGTGTGAGGAAGCTGGTGTTCCTTACGTATACGT  317
            |||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  318  TGATGTTATTACTCATCTTCCAATCTTGTGTGAGGAGGCTGGTGTTCCTTATGTATACGT  377

Query  318  TCCATCCAAAGAAGATCTCGCGCAGGCCGGGGCAACGAAACGACCAACATGTTGTGTCTT  377
            ||| || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct  378  TCCTTCAAAAGAAGATCTTGCGCAAGCAGGGGCAACGAAACGACCAACATGTTGTGTCTT  437

Query  378  GGTCATGCTTAAACCGGCGAAAGGAGACTTAACTGCGGAAGAGCTTGAAAAGTTAAAGAC  437
            ||| ||||||||||| ||||||||||| |||||||| ||||| |||| ||||||||||||
Sbjct  438  GGTAATGCTTAAACCTGCGAAAGGAGATTTAACTGCAGAAGAACTTGCAAAGTTAAAGAC  497

Query  438  AGACTACGAACAAGTCTCTGACGATATTAAGGAGCTAGCAACTTCTGTAATCTGATTAGA  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  498  AGACTACGAACAAGTCTCTGACGATATTAAGGAGCTAGCAACTTCTGTAATCTGATTAGA  557

Query  498  AACTAGAATG  507
            ||||||||||
Sbjct  558  AACTAGAATG  567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5