BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940287
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08260.1 | Symbols: scpl35 | serine carboxypeptidase-like 35... 2355 0.0
> AT5G08260.1 | Symbols: scpl35 | serine carboxypeptidase-like
35 | chr5:2657151-2661416 FORWARD LENGTH=1672
Length=1672
Score = 2355 bits (1275), Expect = 0.0
Identities = 1419/1489 (95%), Gaps = 8/1489 (1%)
Strand=Plus/Plus
Query 1 GAGAAGAGAAAGCG-TTTGGCGATGAAGAAGAACGCACTTTGGCTACTGTGCATTCTGGT 59
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GAGACGAGAAAGAGTTTTGGCGATGAAGAAGAACGCACTTTGGCTACTGTGCATTCTGGT 123
Query 60 GTTACCGGCGATAGCCTGTGGTAGGCAACCGGGGAAGAAGGTAACAGTTTCATCCTCTGG 119
||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 124 GTTACCGGCGATAGCCTGTGGTAGGAAACCGGAGAAGAAGGTAACAATTTCATCCTCTGG 183
Query 120 GAGGAAAGAAGATGACCTGGTAACCGGTTTGCCCGGCCAACCACCGGTTAACTTTAAACA 179
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 184 GAGGAAGGAAGATGACCTTGTAACCGGTTTGCCCGGCCAACCACCGGTTAACTTCAAACA 243
Query 180 CTACGCCGGTTACGTGAATCTGGGGCCTGAACAGAAGCAGAAGGCACTTTTCTATTGGTT 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 244 CTACGCCGGTTACGTGAATCTGGGGCCTGAACAGAAGCAAAAGGCACTTTTCTATTGGTT 303
Query 240 CTTCGAAGCCCAACAAAACTCTTCTCGTCGTCCTCTCGTCCTTTGGCTCAATGGAGGACC 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTTCGAAGCTCAACAAAACTCTTCTCGTCGTCCTCTCGTCCTTTGGCTCAATGGAGGACC 363
Query 300 GGGTTGCTCATCAATAGCCTATGGAGCTGCACAAGAACTAGGCCCTTTTCTTGTTCAC-A 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 GGGTTGCTCATCAATAGCCTATGGAGCTGCACAAGAACTAGGCCCTTTTCTTGTTCACGA 423
Query 359 CCAACGGTGACAAACTTACCTACAATAATTTCTCCTGGAACAAAGAGGCCAATATGTTGT 418
| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 424 C-AACGGTGGCAAACTTACCTACAATCATTTCTCTTGGAACAAAGAGGCCAATATGTTGT 482
Query 419 TCTTGGAAGCACCGGTTGGGGTTGGGTTCTCGTATACCAATAACTCAATGGATCTTCAAA 478
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCTTGGAAGCGCCGGTTGGGGTTGGGTTCTCGTATACCAATAACTCAATGGATCTTCAAA 542
Query 479 AGCTTGGAGATGAAGTTACCGCAGCGGACTCTCTTGCTTTCTTGATCAACTGGTTCATGA 538
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 543 AGCTTGGAGATGAAGTTACTGCATCGGACTCTCTTGCTTTCCTGATCAACTGGTTCATGA 602
Query 539 AATTCCCCGAGTTCCGATCCAACGAGTTTTACATCTCCGGAGAGAGTTACGCCGGTCACT 598
||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct 603 AATTCCCCGAGTTCCGATCCAGCGAGTTCTACATCTCTGGCGAGAGTTACGCCGGTCACT 662
Query 599 ATGTTCCTCAGCTTGCGGAGGTAATTTACGACAGGAACAAGAAG---ACAAAAGACTCTC 655
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 663 ATGTTCCTCAGCTCGCGGAGGTAATTTACGACAGGAACAAGAAGGTTACGAAAGACTCTA 722
Query 656 GCATTAATCTCAAGGGTTTCATGATAGGGAATGCGGTGATCAATGAGGCAACAGACATGG 715
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 723 GCATTAATCTCAAGGGATTCATGATAGGGAACGCGGTGATCAATGAGGCAACAGACATGG 782
Query 716 CAGGACTAGTGGACTACGCATGGAGCCACGCTATAATATCGGACGAGGTCCACACCAACA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 783 CAGGACTAGTGGACTACGCATGGAGCCACGCTATAATATCGGACGAGGTCCACACCAGCA 842
Query 776 TCCATGGCTCGTGCCGTTTTGAGGAAGATACCACCAACAAGACCGAACAATGCTACAACA 835
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TCCATGGCTCGTGCAGTTTTGAGGAAGATACCACCAACAAGACCGAACAATGCTACAACA 902
Query 836 ATTTCAAAGGGTTCATGGATGCTTACAACGATATCGATATATACAGCATCTACACTCCCG 895
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 903 ATTTCAAAGGGTTCATGGATGCTTACAATGATATCGATATATACAGTATCTACACTCCCG 962
Query 896 TTTGCCTCTCCTCTTTGTCCTCATCTTCTCCAAGTAAACCTAAAATTGTCGTGTCTCCTC 955
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 963 TTTGCCTCTCCTCTTTGTTGTCATCTTCTCCAAGAAAACCTAAAATCGTCGTGTCTCCTC 1022
Query 956 GTCTCCTTACTTTTGACGACATGTGGGTCAAGTTTCCGGCCGGGTACGATCCATGCACTG 1015
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1023 GTCTCCTTACTTTTGACGATTTGTGGGACAAGTTTCCGGCCGGGTACGATCCATGCACTG 1082
Query 1016 AAGGTTATGCCGAAAATTATTTTAACCGGAAAGATGTGCAGGTTGCACTCCATGCGAATG 1075
|| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1083 AAAGTTATGCCGAGAATTACTTTAACCGGAAAGATGTGCAGGTTGCACTCCATGCGAACG 1142
Query 1076 TCACAAACCTTCCTTATCCGTACTCTCCTTGCAGCGGAGTAATAAAGAGATGGAATGATG 1135
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1143 TCACCAACCTTCCTTATCCGTACTCTCCTTGCAGCGGAGTAATAAAGAGATGGAGTGATG 1202
Query 1136 CTCCATCCACCATGATTCCCACCATACAAAAGCTTTCAACGGGCGGCCTCCGCATCTGGA 1195
||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 1203 CTCCATCCACCATGATTCCCATCATACAAAAGCTTTTGACGGGTGGCCTCCGTATCTGGA 1262
Query 1196 TCTATAGCGGAGATACGGACGGGAGAGTTCCGGTAACATCTACACGCTATAGCATAAAAA 1255
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1263 TCTATAGTGGAGATACGGATGGGAGAGTTCCGGTAACATCTACACGTTATAGCATAAAAA 1322
Query 1256 AGATGGGACTTAAGGTTGAGTTACCGTGGAGGTCATGGTTCCACAAGAGTCAAGTGGCTG 1315
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1323 AGATGGGACTTAAGGTCGAGTCACCGTGGAGGTCATGGTTCCACAAGAGTCAAGTAGCTG 1382
Query 1316 GATGGGTTGAGACTTATGCCGGAGGACTAACGTTTGTCACGGTGAGAGGAGCCGGTCACC 1375
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1383 GATGGGTTGAGACTTATGCCGGTGGACTAAATTTTGTCACGGTGAGAGGAGCCGGTCACC 1442
Query 1376 AGGTTCCGTCCTTTGCTCCGGCGCAATCTCTCACATTATTCTCTCACTTCCTTTCTTCAG 1435
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1443 AGGTTCCGGCCTTGGCTCCGGCGCAATCTCTCACATTATTCTCTCACTTCATTTCTTCTG 1502
Query 1436 TGCCCTTGCCTTCAAAACGGTTCTGAT--CAGTACCGTCAAGTCATGAT 1482
| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1503 TCCCCTTGCCTTCAAAACGGTTCTGATATCAGTACCGTCAAGTCATGAT 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5