BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940289
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08280.1 | Symbols: HEMC | hydroxymethylbilane synthase | ch... 1953 0.0
> AT5G08280.1 | Symbols: HEMC | hydroxymethylbilane synthase |
chr5:2663499-2665792 REVERSE LENGTH=1609
Length=1609
Score = 1953 bits (1057), Expect = 0.0
Identities = 1141/1183 (96%), Gaps = 0/1183 (0%)
Strand=Plus/Plus
Query 9 CTCCACCTGAATCCATGGATATCGCTTCATCATCTCTTTCACAAGCTCACAAAGTCGTTC 68
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 183 CTCCACCTGAATCCATGGATATTGCTTCGTCATCTCTCTCACAAGCTCACAAAGTCGTTC 242
Query 69 TCACGCGTCAACCTTCTTCTCGGGTCAACTCCTGCTCCCTTGGTTCTGTCTCAGCTATCG 128
||||||||||||||||||| ||||||||| ||||||||||||| || ||||| |||||||
Sbjct 243 TCACGCGTCAACCTTCTTCCCGGGTCAACACCTGCTCCCTTGGCTCGGTCTCCGCTATCG 302
Query 129 GATTCTCTCTTCCGCAGATTAGCTCTCCAGCTTTAGCTAAATGTCACCGCAAACAAAGCT 188
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 303 GATTCTCTCTTCCGCAGATTAGCTCTCCAGCTTTAGGTAAATGTCGCCGGAAACAAAGCT 362
Query 189 CTTCTGGGTTCGTGAAAGCTTGTGTTGCTGTTGAACAGAAGACCCGAACTGCTATCATCA 248
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 363 CTTCTGGGTTCGTGAAAGCTTGTGTTGCTGTTGAACAGAAAACCCGAACTGCTATCATCA 422
Query 249 GAATTGGCACAAGAGGAAGTCCTCTAGCACTTGCTCAAGCATACGAGACGCGAGAAAAGC 308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GAATTGGCACAAGGGGAAGTCCTCTAGCACTTGCTCAAGCATACGAGACGCGAGAAAAGC 482
Query 309 TCAAGTCGAAACACCCTGAACTTGTTGAAGATGGAGCTATTCATATCGAAATCATCAAAA 368
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 483 TCAAGAAGAAACACCCTGAACTCGTTGAAGATGGAGCTATTCATATCGAGATCATTAAAA 542
Query 369 CCACCGGTGATAAGATTCTATCTCAACCGCTTGCTGATATTGGTGGGAAAGGACTTTTCA 428
| || |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 543 CGACTGGTGATAAGATTCTTTCGCAACCGCTTGCTGATATTGGTGGGAAAGGACTTTTCA 602
Query 429 CCAAAGAAATAGACGAGGCCTTGATAAATGGTCATATTGACATAGCTGTTCACTCGATGA 488
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 603 CCAAAGAAATAGACGAGGCCTTGATAAATGGTCATATTGACATAGCTGTGCACTCAATGA 662
Query 489 AAGATGTCCCAACTTATTTACCTGAAAAAACGATTTTACCTTGTAACCTTCCACGTGAGG 548
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 663 AAGATGTCCCAACTTACTTACCAGAAAAAACGATTTTACCTTGTAACCTTCCGCGTGAGG 722
Query 549 ATGTTCGAGATGCGTTTATTTGTCTGACTGCAGCCTCGTTAGCTGAGCTTCCAGCTGGAA 608
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 723 ATGTTCGAGATGCGTTTATTTGTCTAACTGCAGCCACGTTAGCTGAGCTTCCAGCTGGAA 782
Query 609 GCGTTGTGGGAACAGCTTCTCTCAGGAGAAAATCGCAGATTCTCCACAAATATCCTGCAT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GCGTTGTGGGAACAGCTTCTCTCAGGAGAAAATCGCAGATTCTCCACAAATATCCTGCAT 842
Query 669 TACATGTTGAGGAAAACTTTAGGGGTAATGTGCAGACAAGACTATCAAAACTTCAAGGAG 728
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 843 TACATGTTGAGGAAAACTTCAGGGGTAATGTGCAGACAAGACTATCAAAACTACAAGGAG 902
Query 729 GAAAGGTCCAAGCCACTCTATTAGCACTAGCTGGTCTCAAGAGATTGAGTATGACAGAGA 788
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 903 GAAAGGTCCAAGCAACTCTATTAGCACTAGCTGGTCTTAAGAGATTGAGTATGACAGAGA 962
Query 789 ATGTCGCATCTATCTTATCTCTCGATGAAATGCTTCCAGCTGTTGCTCAAGGAGCTATTG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATGTCGCATCTATCTTATCTCTCGATGAAATGCTTCCAGCTGTTGCTCAAGGAGCTATTG 1022
Query 849 GAATTGCCTGTAGAACTGATGATGATAAAATGGCAACTTACTTAGCCTCACTGAACCACG 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GAATTGCCTGTAGAACTGATGATGATAAAATGGCAACTTACTTAGCCTCACTGAACCACG 1082
Query 909 AGGAAACAAGACTAGCGATTTCATGCGAGAGAGCATTTCTTGAAACGCTAGATGGCTCAT 968
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1083 AGGAAACAAGACTAGCGATTTCATGCGAGAGAGCTTTTCTTGAAACGCTAGATGGCTCAT 1142
Query 969 GCCGTACTCCTATTGCTGGATACGCAGCCAAGGACGAAGAAGGCAACTGCATTTTCAGAG 1028
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1143 GCCGTACTCCTATTGCTGGATACGCATCCAAGGACGAAGAAGGCAACTGCATTTTCAGAG 1202
Query 1029 GATTGGTTGCCTCCCCTGACGGTACTAAAGTGCTTGAGACCTCAAGAAAAGGTCCATACG 1088
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1203 GATTGGTTGCTTCCCCTGACGGTACTAAAGTTCTTGAGACCTCAAGAAAAGGTCCATACG 1262
Query 1089 TGTATAAAGACATGGTGAAGATGGGAAAAGATGCGGGGCAAGAATTGCTTTCTCGTGCTG 1148
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1263 TGTATGAAGACATGGTGAAGATGGGAAAAGACGCGGGGCAAGAATTGCTATCTCGTGCTG 1322
Query 1149 GTCCTGGCTTCTTCGGCAACTAAGCCATTCGAAGAAGAAGAGG 1191
||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1323 GTCCTGGCTTCTTCGGCAACTGAGCCATTCGAAGAAGAGGAGG 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5