BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940294
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08320.1 | Symbols: | CONTAINS InterPro DOMAIN/s: E2F-assoc... 761 0.0
> AT5G08320.1 | Symbols: | CONTAINS InterPro DOMAIN/s: E2F-associated
phosphoprotein, C-terminal (InterPro:IPR019370); Has
149 Blast hits to 149 proteins in 78 species: Archae - 0; Bacteria
- 0; Metazoa - 79; Fungi - 0; Plants - 35; Viruses -
0; Other Eukaryotes - 35 (source: NCBI BLink). | chr5:2677052-2678678
FORWARD LENGTH=629
Length=629
Score = 761 bits (412), Expect = 0.0
Identities = 470/498 (94%), Gaps = 3/498 (1%)
Strand=Plus/Plus
Query 1 GTGAAGATCGAACCTTAAAACCATGGCTTCTCCGACTAATTCACAGAAAACAGTTTCGGA 60
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 80 GTGAAGATCGAATCTTAAAACCATGGCTTCTCCGACCAATTCACAGAAAACAGTTTCGGA 139
Query 61 TGACGACGAGGTTGATTACTCCATCAAACCAGAATTCTATGATTCAGATCTTGATGATAA 120
|||||| || |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 140 TGACGAGGAAGTTGATTACTCCATCAAACCGGAGTTCTATGATTCAGATATTGATGATAA 199
Query 121 AGATGAGCTATGGATGGTTAAGAAGAGAGATGGTCGTACTTCTGATGCTGTACTTAGCTG 180
||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 200 AGATGAGCTTTGGATGGATAAGAAGAGAGATGGTCGTACTTCTGATGCTCTTCTTAGCTG 259
Query 181 TCCAGCTTGTTTCACCACTGTTTGCTTAGAGTGTCAGAGGCACGAGCAGTATGTGACACA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCCAGCTTGTTTCACCACTGTCTGCTTAGAGTGTCAGAGGCACGAGCAGTATGTGACACA 319
Query 241 GTACAGGGCAGTCTTTGTGGTCAATTGCAAAGT-GGATACAGACAGAGTTTTGCAACAAA 299
|||||| |||||||||||||||||||||||||| || |||||||| |||||||||||| |
Sbjct 320 GTACAGAGCAGTCTTTGTGGTCAATTGCAAAGTAGG-TACAGACACAGTTTTGCAACAGA 378
Query 300 ATGCAATGCCCTCAAAGGTTGGTAAAAGAAGGAGAGATTCCGAGATGCAAGAAACTGGTT 359
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ATACAATGCCCTTAAAGGTTGGTAAAAGAAGGAGAGATTCCGAGATGCAAGAAACTGGTT 438
Query 360 CTGAAGGCAGCGAAAAAGTTAACCCGGTCTTTTGCTCGGCTTGTTCAACAGAGATCGGAG 419
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 439 CTGAAGATAGCGAAAAAGTTAACCCGGTCTTTTGCTCAGCTTGTTCCACAGAGATCGGAG 498
Query 420 TAGTTGACAGTGAAGAGATCTACCATTTCTTTAATGTCATCCCAAGCGAGCCTTGATACA 479
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 499 TAGTTGACAGTGAAGAGATCTACCATTTCTTTAATGTCATTCCAAGCGAGCCTTAAAACA 558
Query 480 AACATGGTTTTATGAGTT 497
| | ||||||||||||||
Sbjct 559 ACC-TGGTTTTATGAGTT 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23810985678
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5