BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940295
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08330.1 | Symbols: | TCP family transcription factor | ch... 1249 0.0
> AT5G08330.1 | Symbols: | TCP family transcription factor |
chr5:2680744-2681813 FORWARD LENGTH=1070
Length=1070
Score = 1249 bits (676), Expect = 0.0
Identities = 735/763 (96%), Gaps = 6/763 (1%)
Strand=Plus/Plus
Query 3 ATAACG-AACCCTAATTCCATGGCCAACAACGACGGAGCAGTGACTAACGGCGTCATAAT 61
|||||| || ||||||||||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct 66 ATAACGAAATCCTAATTCCATGGCCGACAACGACGGAGCAGTGAGTAACGGCATCATAGT 125
Query 62 CGAGCAGACGTCAAACAAAGGACCTCTTAACGCCGTTAAGAAACCACCGTCTAAAGATCG 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CGAGCAGACGTCAAACAAAGGACCTCTTAACGCCGTTAAGAAACCACCGTCTAAAGATCG 185
Query 122 ACACAGCAAAGTTGACGGAAGAGGAAGAAGGATTCGTATGCCAATCATTTGCGCAGCTCG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 ACACAGCAAAGTTGACGGAAGAGGAAGAAGGATTCGTATGCCAATCATTTGCGCAGCTCG 245
Query 182 AGTTTTCCAATTGACCAGAGAGTTAGGTCACAAGTCCGATGGTCAAACCATAGAGTGGCT 241
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGTTTTTCAATTGACCAGAGAGTTAGGTCACAAGTCCGATGGTCAAACCATAGAGTGGCT 305
Query 242 TCTCCGTCAAGCTGAGCCTTCTATCATAGCCGCCACTGGAACTGGCACTACTCCGGCAAG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 TCTCCGTCAAGCTGAGCCTTCTATCATAGCCGCCACTGGAACTGGCACTACTCCGGCGAG 365
Query 302 TTTCTCCACTGCTTCTCTTTCCACTTCTTCTCCGTTTACACTCGGAAAACGTGTCTTCAG 361
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 366 TTTCTCCACTGCTTCTCTCTCCACTTCTTCTCCGTTTACTCTCGGGAAACGTGTCGTCAG 425
Query 362 AGCGGAGGAAGGAGAATCCGGCGGCGGCGGCGGAGGAGGAGGGTTAACAGTGGGACACAC 421
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 426 AGCGGAGGAAGGAGAATCCGGCGGCGGAGG---AGGAGGAGGGTTAACAGTGGGACACAC 482
Query 422 AATGGGGACTTCGTTAATGGGTGGTGGTGGTTCTGGTGGGTTTTGGGCTGTTCCGGCGAG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AATGGGGACTTCGTTAATGGGTGGTGGTGGTTCTGGTGGGTTTTGGGCTGTTCCGGCGAG 542
Query 482 GCCTGATTTCGGACAAGTCTGGAGCTTTGCAGCCGGAGCTCCACCGGAGATGGTTTTTGC 541
||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 543 GCCGGATTTCGGACAAGTCTGGAGCTTTGCAACCGGAGCTCCACCGGAAATGGTTTTTGC 602
Query 542 TCAGCAGCAGCAACCAGCTACACTCTTTGTCCGCCACCAGCAGCAACAGCAAGCTTCCGC 601
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 603 GCAGCAGCAGCAACCAGCTACACTCTTCGTCCGCCACCAGCAGCAACAGCAAGCTTCCGC 662
Query 602 CGCCGCAGCCGCTGCAATGGGTGAGGCTTCAGCAGCTAGAGTTGGGAATTATCTTCCGGG 661
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CGCCGCAGCAGCTGCAATGGGTGAGGCTTCAGCAGCTAGAGTTGGGAATTATCTTCCGGG 722
Query 662 CCATCATCTCAATTTGCTTGCTTCTTTGTCTGGTGGAGCTAACGGGTCGGGTCGGAGGGA 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCATCATCTCAATTTGCTTGCTTCTTTGTCTGGTGGAGCTAACGGGTCGGGTCGGAGGGA 782
Query 722 AGACGACCACGACCCACGTTGAGAAAAAAGGTTTTGTCTTTTT 764
|||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 783 AGACGACCACGAACCACGTTGAGAAAT--GGTATTGTCTTTTT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5