BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940302

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | ...   198    4e-50
  AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | ...   163    1e-39


> AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 
| chr5:1636298-1638939 FORWARD LENGTH=1702
Length=1702

 Score =  198 bits (107),  Expect = 4e-50
 Identities = 148/167 (89%), Gaps = 5/167 (3%)
 Strand=Plus/Plus

Query  195  TTG-TTGTGAGATGGTTCTTTGTGATGATGGGAGTGAAGCTGTTGTCAGAGTTTCTGCAG  253
            ||| ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct  555  TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTTGTTAGAGTTGCTGCAG  614

Query  254  TTGACCGTGATTTAAAGGTGATTCTTGACGAATTTGTGAAACCGAATAAACCAGTT-TCT  312
            |||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| | |
Sbjct  615  TTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAACCGGTTGT-T  673

Query  313  GACTACAGAACCGATG-TTACCGGGCTTACTGCTCAAGATCTTGAAA  358
            ||||| || ||   |  |||| || ||||||||||||||||||||||
Sbjct  674  GACTATAGGACTT-TCATTACTGGACTTACTGCTCAAGATCTTGAAA  719


 Score = 65.8 bits (35),  Expect = 4e-10
 Identities = 41/44 (93%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  392  TGGATCATGCAAGAAAAATTGATACTTCACTTGTGTTTAAGTAT  435
            |||||||||| |||  ||||||||||||||||||||||||||||
Sbjct  828  TGGATCATGCCAGAGTAATTGATACTTCACTTGTGTTTAAGTAT  871


> AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 
| chr3:18578353-18580594 FORWARD LENGTH=1288
Length=1288

 Score =  163 bits (88),  Expect = 1e-39
 Identities = 155/187 (83%), Gaps = 6/187 (3%)
 Strand=Plus/Plus

Query  180  TAAGATGGTTGCTGTTTG-TTGTGAGATGGTTCTTTGTGATGATGGGAGTGAAGCTGTT-  237
            ||| ||||| |||| ||| ||||||||||||||||||||| ||||||| ||| | | || 
Sbjct  472  TAACATGGTAGCTG-TTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGT-TTA  529

Query  238  GTCAGAGTTTCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGACGAATTTGTGAAACCG  297
            || ||||||  ||  || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  530  GTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCG  589

Query  298  AATAAACCAGTT-TCTGACTACAGAACCGATGTTACCGGGCTTACTGCTCAAGATCTTGA  356
            || ||||| ||| | |||||| || || ||  |||| ||| |||||||| ||||| | ||
Sbjct  590  AACAAACCTGTTGT-TGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGA  648

Query  357  AACTGCT  363
            || ||||
Sbjct  649  AAATGCT  655



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25066839353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5