BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940325
Length=296
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 335 2e-91
> AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:2753099-2755116 FORWARD LENGTH=1921
Length=1921
Score = 335 bits (181), Expect = 2e-91
Identities = 205/217 (94%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1 ATGTACCCGTGTGGAATGCAATGATCACGGGTTACCAAAAACGAGGTGATATGAAGGCGG 60
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 440 ATGTACCCGTGTGGAATGCAATGATCACGGGCTACCAACGACGAGGTGATATGAAGGCGG 499
Query 61 CGATGGAGTTGTTCGATTCAGTTCCTCGTAAGAACGTAACCTCGTGGACCACCGTCATTT 120
||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 500 CGATGGAGTTGTTTGATTCAATGCCTCGTAAGAACGTAACCTCGTGGACCACCGTCATTT 559
Query 121 CTGGGTTTTCTCAGAACGGAAATTACTCTGAAGCTTTAACCATGTTTTTGTGTATGGAGA 180
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 560 CTGGGTTTTCTCAGAACGGGAATTACTCTGAAGCTTTAAAGATGTTTTTGTGTATGGAGA 619
Query 181 AATACAAATCCGTGAAACCAAACCATATTACTCTAGT 217
|| |||| |||||||||||||||||||||||| ||||
Sbjct 620 AAGACAAGTCCGTGAAACCAAACCATATTACTGTAGT 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13672827728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5