BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940327

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08440.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   560    4e-159


> AT5G08440.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 
growth stages; BEST Arabidopsis thaliana protein match is: 
unknown protein (TAIR:AT5G23490.1). | chr5:2720669-2727167 FORWARD 
LENGTH=2884
Length=2884

 Score =  560 bits (303),  Expect = 4e-159
 Identities = 325/335 (97%), Gaps = 3/335 (1%)
 Strand=Plus/Plus

Query  46    ATCCGGAGATGCAGAGTCATATAGAGAAGAGTCTTTATAACGGTCATGCTTTATTCAAAG  105
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2302  ATCCAGAGATGCAGAGTCATATAGAGAAGAGTCTTTATAACGGTCATGCTTTATTCAAAG  2361

Query  106   TCTCCTATTCGATTGGTTATATGGATATATGGGAAGCAGCTACCTTGTCTATTAAGAAAG  165
             |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct  2362  TCTCCTATTCAATTGGTTATTTGGATATATGGGAAGCAGCTACATTGTCTATTAAGAAAG  2421

Query  166   AAGGCTACAGCATCAAACCTACTAATGACCCTGTAATTACAGAAAAGTTCTCCTCTTCTA  225
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2422  AAGGCTACAGCATCAAACCTACTAATGACCCTGTAATTACAGAAAAGTTCTCCTCTTCTA  2481

Query  226   CTAATATTGTGATTCCCTTTGATCAGCCTGCGGATTTTGTGATTATTGGTAGCGATGGCG  285
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  2482  CTAATATTGTGATTCCCTTTGATCAGCCTGCGGATTTTGTGATTATTGGTACCGATGGCG  2541

Query  286   TGGAGCATCTCTGTCGAGT-G-GG-CAATGATGCAACAGATCTTAGCTGCTCAAGAGACA  342
              |||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
Sbjct  2542  AGGAGCATCTCTGTCGAGTAGTGGACAATGATGCAACAGATCTTAGCTGCTCAAGAGATA  2601

Query  343   CAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG  377
             |||||||||||||||||||||||||||||||||||
Sbjct  2602  CAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG  2636



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5