BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940329

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08460.1 | Symbols:  | GDSL-like Lipase/Acylhydrolase superf...   743    0.0  


> AT5G08460.1 | Symbols:  | GDSL-like Lipase/Acylhydrolase superfamily 
protein | chr5:2733220-2735455 FORWARD LENGTH=1262
Length=1262

 Score =  743 bits (402),  Expect = 0.0
 Identities = 467/498 (94%), Gaps = 6/498 (1%)
 Strand=Plus/Plus

Query  23   ATGGATGATAGTGAAATATTCAAATTTAAAGAC---ATGATGATGTCTTGCACAGTACAA  79
            ||| ||||||||||||||||||| |||||||||   |||||||||||||||||||| |||
Sbjct  1    ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCACAGTTCAA  60

Query  80   TCATTAGTGCTTGTTCCATGGTTTCTAGTAGTAGTAGGACTTGCCGGTGGAGAAGTCTCA  139
             ||||||| |||||||||||||||||||||||| | | ||| ||||||||||||| ||||
Sbjct  61   ACATTAGTACTTGTTCCATGGTTTCTAGTAGTATTTGTACTCGCCGGTGGAGAAGACTCA  120

Query  140  TCC--GA-GACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCGTTGGTGGACAAC  196
            |||  || ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  121  TCCGAGACGACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCTTTGGTGGATAAC  180

Query  197  GGAAACAATAACCACTTGAACTCATTGGCTAGGTCCAACTATCTCCCTTACGGCATTGAT  256
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  181  GGAAACAATAACCACTTGAACTCACTGGCTAGGTCCAACTATCTCCCTTACGGCATCGAT  240

Query  257  TTCGCCGGAAATCAACCCACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATG  316
            ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  TTCGCTGGAAATCAACCAACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATT  300

Query  317  GGAGAGTTGCTAGGGCTGCCGGAGATACCCGCATTTATGGACACGGTGGACGGAGGAGTG  376
            ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct  301  GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCGTTTATGGACACGGTTGACGGAGGAGTG  360

Query  377  GATATTCTCCAGGGAGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT  436
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GATATTCTCCATGGTGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT  420

Query  437  CGACATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAAAAGACATTA  496
            || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  421  CGCCATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAGAAGACATTA  480

Query  497  ATGGAGATCAGTAGGAGC  514
            |||||||| |||||||||
Sbjct  481  ATGGAGATAAGTAGGAGC  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25971053999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5