BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940330

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08460.1 | Symbols:  | GDSL-like Lipase/Acylhydrolase superf...   553    6e-157


> AT5G08460.1 | Symbols:  | GDSL-like Lipase/Acylhydrolase superfamily 
protein | chr5:2733220-2735455 FORWARD LENGTH=1262
Length=1262

 Score =  553 bits (299),  Expect = 6e-157
 Identities = 364/396 (92%), Gaps = 2/396 (1%)
 Strand=Plus/Plus

Query  18   AGGAGCATGAGGAGAGAGTCAGTAAAAGAGTACATGGCAAAGTCCTTGGTGGTGGTGTCA  77
            ||||||||||||| ||||||||| || || || ||||||||||| |||||||||||||||
Sbjct  493  AGGAGCATGAGGAAAGAGTCAGTGAAGGAATATATGGCAAAGTCATTGGTGGTGGTGTCA  552

Query  78   TTGGGTAACAATGACTACATTAACAATTATCTGAAACCAACGCTTTTTCTCACTAGCTCC  137
            |||||||||||||||||||||||||||||||||||||||| ||| || ||| | ||||| 
Sbjct  553  TTGGGTAACAATGACTACATTAACAATTATCTGAAACCAAGGCTATTCCTCTCAAGCTCT  612

Query  138  ATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAA-TTCTACCACTCATCTCCT  196
            ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct  613  ATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTC-ACCACTCATCTCCT  671

Query  197  TGAATTGTACGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGTCCATTGGGTTG  256
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  672  TGAATTGTATGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGTCCATTGGGTTG  731

Query  257  CATACCGGACCAAGTAGCCGCCCGAGCGGCTCCGCCAGGTGAATGTGTGGAGGCGGTTAA  316
            |||||| |||||| ||||||||| |||||||| ||||||||||||||| ||||| || ||
Sbjct  732  CATACCAGACCAACTAGCCGCCCAAGCGGCTCTGCCAGGTGAATGTGTCGAGGCTGTAAA  791

Query  317  CGAGATGGCTGAACTCTTCAACAACCGCCTCGTGTCGCTGGTGGACCGTCTTAATTCCGA  376
            ||||||||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct  792  CGAGATGGCTGAACTTTTCAACAACCGTCTTGTATCGCTGGTGGATCGTCTCAATTCCGA  851

Query  377  TAGTAAAACTGCTAGTGAAGCCATCTTTGTTTGCGG  412
            ||  ||||| |||||||||||||||||||||| |||
Sbjct  852  TAACAAAACCGCTAGTGAAGCCATCTTTGTTTACGG  887



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5