BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940333
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08470.1 | Symbols: PEX1 | peroxisome 1 | chr5:2735925-27430... 2586 0.0
> AT5G08470.1 | Symbols: PEX1 | peroxisome 1 | chr5:2735925-2743056
FORWARD LENGTH=3718
Length=3718
Score = 2586 bits (1400), Expect = 0.0
Identities = 1485/1527 (97%), Gaps = 2/1527 (0%)
Strand=Plus/Plus
Query 446 GTATCCTGTTCTACGCTTGCCTTGGAGAAGGTTCAACACATCCATCAAGTCCTTTCTAGT 505
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1888 GTATCCTGTTCTACACTTGCCTTGGAGAAGGTTCAACACATCCATCATGTCCTTTCTAGT 1947
Query 506 GTAATAGCTGAGGGCTTGGAACATGCACCATCCGTCATCATTTTGGATGATCTCGATAGC 565
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1948 GTAATAGCTGAGGGGTTGGAACATGCACCATCTGTCATCATTTTGGATGATCTTGATAGC 2007
Query 566 ATTATCTCATCGTCTTCAGATACCGAAGGAACACAAGCTTCGGTTGGGGTTACGATGCTT 625
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2008 ATTATCTCATCGTCTTCTGATACTGAAGGAACACAAGCTTCGGTTGGGGTTACAATGCTT 2067
Query 626 ACAAAATTCCTAACAGATGTTATAGATGATTATGGGGAATACAAGAATAACTCTTGTGGA 685
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 2068 ACAAAATTCCTAACAGATGTTATAGATGATTATGGGGAATACAGGAATTCCTCTTGTGGA 2127
Query 686 ATTGGCCCACTTGCATTCGTTGCTTCTGTCCAGTCTCTAGAGCAAATTCCACAGACATTG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 ATTGGCCCACTTGCATTCGTTGCTTCTGTCCAGTCTCTAGAGCAAATTCCACAGACATTG 2187
Query 746 AGCTCATCAGGAAGGTTTGACTTCCATGTGCAACTGGCTGCTCCTGCTACCTCGGAACGT 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 AGCTCATCAGGAAGGTTTGACTTCCATGTGCAACTGGCTGCTCCTGCTACCTCGGAACGT 2247
Query 806 GGGGCCATACTGAAGCATGAGATACAGAAACGCCTTTTAGACTGTTCAGAAGACATATTG 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2248 GGGGCCATACTGAAGCATGAGATACAGAAACGCCTTTTAGACTGTTCAGAAGACATTTTA 2307
Query 866 CTTGACTTAGCTGCTAAATGTGAAGGATATGATGCATATGACCTGGAAATATTGGTTGAT 925
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 CTTAACTTAGCTGCTAAATGTGAAGGATATGATGCATATGACCTGGAAATATTGGTTGAT 2367
Query 926 AGAGCTGTTCATGCTGCCATTGGCCGGCATCTACCTTGT-GAATCAAATATATCCAAATA 984
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2368 AGAGCTGTTCATGCTGCCATTGGCCGGCATCTACCTT-TAGAATCAAATATATCCAAATA 2426
Query 985 TAATTTGGTCAAAGAAGACTTTACTAGAGCTATGCATGATTTTGTGCCTGTTGCCATGCG 1044
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2427 TAATTTGGTCAAAGAAGACTTTACTCGAGCTATGCATGATTTTGTGCCTGTTGCCATGCG 2486
Query 1045 TGACATCACAAAATCCGCCTCTGAAGGTGGTCGTTTGGGGTGGGAAGATGTGGGAGGTGT 1104
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2487 TGACATCACAAAATCTGCCTCTGAAGGTGGTCGTTTGGGGTGGGAAGATGTGGGAGGTGT 2546
Query 1105 GACTGATATTAAAAATGCTATCAAAGAGATGATTGAGCTGCCATCAAAATTTCCAAAAAT 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2547 GACTGATATTAAAAATGCTATCAAAGAGATGATTGAGCTGCCATCAAAATTTCCAAAAAT 2606
Query 1165 CTTTGCAAAATCTCCTTTGCGTTTGAGATCGAATGTTCTCTTGTATGGCCCACCCGGTTG 1224
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2607 CTTTGCAAAATCTCCTCTGCGTTTGAGATCGAATGTTCTCTTGTATGGCCCACCCGGTTG 2666
Query 1225 TGGGAAGACTCACATTGTTGGTGCAGCTGCTGCAGCGTGTTCCCTACGGTTTATATCAGT 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2667 TGGGAAGACTCACATTGTTGGTGCAGCTGCTGCAGCGTGTTCCCTACGGTTTATATCGGT 2726
Query 1285 GAAGGGGCCTGAGTTGTTAAACAAATACATTGGTGCATCTGAACAAGCGGTCCGTGATAT 1344
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2727 GAAGGGGCCTGAGCTGTTAAACAAATACATTGGTGCATCTGAACAAGCGGTCCGTGATAT 2786
Query 1345 ATTTTCAAAAGCAGCAGCTGCAGCACCATGCATACTCTTTTTCGATGAATTCGATTCAAT 1404
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2787 ATTTTCGAAAGCAGCAGCTGCAGCTCCATGCATACTCTTTTTCGATGAATTCGATTCAAT 2846
Query 1405 TGCTCCCAAGAGAGGACATGATAATACCGGTGTAACTGATCGAGTTGTTAATCAATTTTT 1464
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2847 TGCTCCCAAAAGAGGACATGATAATACTGGTGTAACTGATCGAGTTGTTAATCAATTTTT 2906
Query 1465 GACAGAACTGGATGGAGTTGAAGTTCTAACCGGTGTCTTTGTATTTGCTGCAACCAGTAG 1524
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2907 GACAGAACTGGATGGAGTTGAAGTTCTAACAGGGGTCTTTGTATTTGCTGCAACCAGTAG 2966
Query 1525 ACCAGATCTACTTGATCCTGCACTCCTAAGGCCTGGCCGGCTTGATCGTCTTCTTATGTG 1584
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2967 ACCAGATTTACTTGATCCTGCCCTCCTAAGGCCTGGCCGGCTTGATCGTCTTCTTTTGTG 3026
Query 1585 CGACTTTCCTTCCCCACCAGAACGATTAGAGATTCTTACAGTTCTTTCTAGAAAGCTTCC 1644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3027 CGACTTTCCTTCCCCACCAGAACGATTAGAGATTCTTACAGTTCTTTCTAGAAAGCTTCT 3086
Query 1645 AATGGCTGATGATATTGACTTAGAGCCTATAGCTTTGATGACTGAAGGCTTCAGTGGAGC 1704
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3087 GATGGCTGATGATATTGACCTAGAGCCTATAGCTTTGATGACTGAAGGCTTCAGTGGAGC 3146
Query 1705 TGATCTTCAAGCTCTTCTCTCAGATGCGCAACTTGCAGCTGTACACGAGTATCTGAACAG 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3147 TGATCTTCAAGCTCTTCTCTCAGATGCGCAACTTGCAGCTGTACACGAGTATCTGAACAG 3206
Query 1765 AGAAGATAAACCTGAGACTGGAACTACGCCAATAATAACCGATCCTCTTTTGAAGTCGAT 1824
|||||||||||| ||||| |||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 3207 AGAAGATAAACCCGAGACCGGAACTACACCAATAATAACTGATCCTCTTCTGAAGTCGAT 3266
Query 1825 CGCTTCTAAAACTAAACCATCAGTCTCCGAAACCGAGAAACAAAAGCTCTATGACATATA 1884
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 3267 TGCTTCTAAAACTAAACCATCGGTTTCCGAAACCGAGAAACAAAAGCTCTATGACATATA 3326
Query 1885 TAGCCAGTTTCTGGATTCAAGAAAATCGTCAAGAGAAGCAAAGGGCAAAAGGGCAACCTT 1944
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3327 TAGCCAGTTTCTGGATTCAAGAAAATCGTCAAGAGAAGCAAAGGGCAAAAGAGCAACCTT 3386
Query 1945 AGCATAATCAAAGGTATTACAAAGACA 1971
|||||||||||||||||||||||||||
Sbjct 3387 AGCATAATCAAAGGTATTACAAAGACA 3413
Score = 433 bits (234), Expect = 4e-120
Identities = 264/278 (95%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 172 TCGCTCGAGTGTTTGCGGAAAGCATTTCGTT-ACAGTTGTTAAAGTTCGTGTTAAAGTTC 230
||||||||||||||||||||||||||||||| | | || || || | |||||||||||
Sbjct 236 TCGCTCGAGTGTTTGCGGAAAGCATTTCGTTGCCGGATGGTACAG-T--TGTTAAAGTTC 292
Query 231 GTGTTCTTCCTAATGTTCCCAAGGCTACTTTAGTAACAGTCGAACCAGAGACTGAAGATG 290
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GTGTTCTTCCTAATGTGCCCAAGGCTACTTTAGTAACAGTCGAACCAGAGACTGAAGATG 352
Query 291 ACTGGGAAGTTCTTGAGCTCAATGCAGAACTTGCCGAGGCAGCTATACTTAGTCAGGTGA 350
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 353 ACTGGGAAGTTCTTGAGCTCAATGCTGAACTTGCCGAGGCAGCTATACTTAGTCAGGTGA 412
Query 351 GGATACTACATGAGACCATGAAATTCCCTTTGTGGTTGCATGACCGAACTGTGATAAGGT 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 413 GGATACTACATGAGACCATGAAATTCCCTTTGTGGTTGCATGACCGAACTGTGATAAGAT 472
Query 411 TTGCAGTGGTTTCAACATTTCCATCAAAAGGGGTGGTA 448
|| | |||||||||||||||||||||||||||||||||
Sbjct 473 TTTCTGTGGTTTCAACATTTCCATCAAAAGGGGTGGTA 510
Score = 261 bits (141), Expect = 2e-68
Identities = 165/176 (94%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 2 CAAATCATCAT-CTC--CGACGTGATGGAAACAGAAGCGGTGGTTAATACCATCGCCGGC 58
||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 16 CAAATCATCATCCCCGACGACGTGATGGAAACAGAAGCGGTGGTTAATACCGTCGCCGGC 75
Query 59 GTCGACTGTTTCATTTCACTCCCTCGTCAATTACTACACGCGCTTCAATCCACTAGCTCC 118
|||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 76 GTCGACTGTTTCGTCTCACTCCCTCGTCAATTACTACACGCGCTTCAATCCACCAGCTCC 135
Query 119 TCTCCTCTTC-TCCGCTTCTCCCTGTCGAGCTCCGCTCCGGTGACCGCCGTTGGTC 173
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 136 TCTCCTCTCCCTCCGCTTCTCCCTGTCGAGCTACGCTCCGGTGACCGCCGTTGGTC 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97640060025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5