BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940334

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08480.2 | Symbols:  | VQ motif-containing protein | chr5:27...   401    2e-111


> AT5G08480.2 | Symbols:  | VQ motif-containing protein | chr5:2743620-2745111 
FORWARD LENGTH=918
Length=918

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 237/246 (96%), Gaps = 3/246 (1%)
 Strand=Plus/Plus

Query  1    TGTTTTGTCAGAGAAGGACTTACATATGAATAACAAAGGGAGTCAGAACGTTG---CAAC  57
            |||||||||||||||  ||||||||||||||| |||||||||||| |||||||   ||||
Sbjct  268  TGTTTTGTCAGAGAAACACTTACATATGAATAGCAAAGGGAGTCAAAACGTTGCAACAAC  327

Query  58   CTGCAAGCCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCA  117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  328  CTGCAAGCCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCA  387

Query  118  GCGCTTGACAGGTCCATCAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGAT  177
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  388  GCGCTTGACAGGTCCAACAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGAT  447

Query  178  AAAAACCGCCATACAAAAGAGGCCGACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAG  237
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  448  AAAAACCGCCATACAAAAGAGGCCAACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAG  507

Query  238  GCCAAA  243
            ||||||
Sbjct  508  GCCAAA  513


 Score =  375 bits (203),  Expect = 2e-103
 Identities = 234/247 (95%), Gaps = 9/247 (4%)
 Strand=Plus/Plus

Query  240  CAAATCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGGGAGA  299
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||   | | 
Sbjct  597  CAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAA---G-G-  651

Query  300  AAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAAGAGA  359
              |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  652  --G--GAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAAGAAA  707

Query  360  GACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCAGGGTATACAGAACCAGAATTGC  419
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  708  GACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCGGGGTATACAGAACCAGAATTGC  767

Query  420  TTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGGCAAACCATAAACCCGACAGATTA  479
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  768  TTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGCAAACCATAAACCCGACAGATTA  827

Query  480  ATCATAA  486
            |||||||
Sbjct  828  ATCATAA  834



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5