BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940335

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   558    1e-158


> AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr5:2745208-2747757 REVERSE LENGTH=2550
Length=2550

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 312/317 (98%), Gaps = 0/317 (0%)
 Strand=Plus/Plus

Query  1     CGTGTACAACCTATAATAGGATGGATCTGGGGCACTCAGTTGCAAATCATCTTTTGCAAG  60
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  2234  CGTGTACAACCTATAATAGGATGGATCTGGGGCACTCAGTTGCAAATCATCTCTTGCAAG  2293

Query  61    CTGAATCTGACGACACCGGAAACCACGTTCTCATATCGAATATGTATGCTGCAGATGCTA  120
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  2294  CTGAATCTGACGACACCGGAAACCACGTTCTAATATCGAATATGTATGCTGCAGATGCTA  2353

Query  121   AATGGGAAGGCGTGATGGAGTTGAGAAACCTAATGAAGAAAAGGGAAATGAAAAAGCCAG  180
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  2354  AATGGGAAGGCGTGATGGAGTTGAGAAACCTAATGAAGAAAAAGGAAATGAAAAAGCCAG  2413

Query  181   CAGGATGTAGCTGGCTAGAAGTGGATGGGCAAAGGAATGTCTTTGTGTCTGGAGATTGTT  240
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2414  CGGGATGTAGCTGGCTAGAAGTGGATGGGCAAAGGAATGTCTTTGTGTCTGGAGATTGTT  2473

Query  241   CTCACCCTCGTAGAGACAGTATTTTTGACTTAGTGAATGCTTTATATCTTCAGATGAAAG  300
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  2474  CTCACCCTCGTAGAGACAGTATTTTTGACTTAGTAAATGCTTTATATCTTCAGATGAAAG  2533

Query  301   AGCCTGTGGTGTTTTAA  317
             |||||||||||||||||
Sbjct  2534  AGCCTGTGGTGTTTTAA  2550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15784073186


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5