BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940337
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein |... 3009 0.0
AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein |... 1744 0.0
> AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:2748193-2751771 FORWARD LENGTH=2022
Length=2022
Score = 3009 bits (1629), Expect = 0.0
Identities = 1752/1813 (97%), Gaps = 2/1813 (0%)
Strand=Plus/Plus
Query 1 GAAAGCATCTTTCTGCGAATATGGCGCCTCCGGCAAGTGAAACAGCTGCGGTGGTTGACG 60
||| ||||||| |||||| ||||||| | |||||| |||||||||| ||||| ||||| |
Sbjct 49 GAAGGCATCTTCCTGCGATTATGGCGTCGCCGGCAGGTGAAACAGCAGCGGTTGTTGAGG 108
Query 61 GCGGTGATGGGCAGCAGCAACGACAAGCTGGTGGGTTTGGGCAGGCAATTACCGGAATCA 120
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 109 GCGGAGATGGGCAGCAGCAACGACAAGCTGGTGGGTTTGGGCAGACAATTACCGGAATCA 168
Query 121 TTAGAATCGCCGTCTTCTGCTACTTTGCTTCTAAGTTCTTTTCTCCGAAACAAAAACCAT 180
| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 169 TAAGAATCGCCGTCTTCTGTTACTTTGCTTCTAAGTTCTTTTCTCCCAAACAAAAACC-T 227
Query 181 -CGGATCCTTCTAAGCCTTCTCATCTTATGTCCAATCTCTTTCAGAGGGGAGAGCCCATG 239
|||||||||| |||||| ||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 228 GCGGATCCTTCCAAGCCTACTCATCTCATGTCCAATCTATTTCAGAGGGGCGAGCCCATA 287
Query 240 GATATGTGGTTTTATCTTTCGGAGCATGAGAAATTCAATGACTTTGGCAATGAAGGTGCG 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 288 GATATGTGGTTTTATCTTTCGGAGCATGAGAAATTCAATGACTTCGGCAATGAAGGTGCG 347
Query 300 CTTATTTGGCACGAGACAAACATACCTTATGCTGTGTGGAAGCCAGAGAGCACTAGGACC 359
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 348 CTTATTTGGCATGAGACAAACATACCTTATGCTGTGTGGAAACCAGAGAGCACTAGGACC 407
Query 360 TTGTCAATGACATATTATCCATCCGAGGCACTGAAGAATAATGGAAGTCTGTATGCTCAT 419
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 408 TTGTCAATGACGTACTATCCTTCCGAGGCACTGAAGAATAATGGAAGTCTGTATGCTCAT 467
Query 420 GTCTTCTTTGCTCGATCTGGTTATCCTATAGATCCTAGTGATCCTGAATACCAGCCTCTT 479
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 468 GTCTTCTTTGCTCTATCTGGTTATCCTATAGATCTTAGTGATCCTGAATACCAGCCTCTC 527
Query 480 AACTGCTTTGGCAGGACACACCCCATTGCAACTTACTTACCAAAGCGAAAAGCAGATAAG 539
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 528 AACTGCTTTGGCAGGACTCACCCTGTTGCAACTTACTTACCAAAGCGAAAAGCAGATAAG 587
Query 540 AAGAAGAGTCTGTTGGGAAATCCCAAAGACGATGATGAATCCAATGTTGAAGTTGAGGAG 599
|||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||
Sbjct 588 AAGAAGAGTCTGTTGGGAAATCCCAAAGACTCTGATGAATCCCATGTGGAAGTTGAGGAG 647
Query 600 GTTGATGGTAAGGACTCGGATCTCAAGGATGAGGGACCTGTGGAATGGGTTTCCTACTGG 659
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 648 GTTGATGGTAAGGACTCGGATCTCAAGGATGAGGGCCCTGTGGAATGGGTATCCTACTGG 707
Query 660 AAACCAAATGTCACAATTAACCTAGTCGATGACTTTACTCGCTATCCACAGCATGGTGTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AAACCAAATGTCACAATTAACCTAGTCGATGACTTTACTCGCTATCCACAGCATGGTGTA 767
Query 720 CCACCAAACATTGATCCTTACTTACTGGTGGAACCTAGTACAGTAAACTACTACCCTACA 779
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 768 CCACCAAACATTTATCCTTACTTACTGGTGGAACCTAGTACAATAAACTACTACCCTACA 827
Query 780 GTTTTCTTTAATGAGTTTTGGCTGCTAAGGGACAAGTTGATTTTAATCAATGAGACGGTC 839
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 828 GTTTTCTTCAATGAGTTTTGGTTGCTAAGGGACAAGTTGATTTTAATCAATGAGACGGTC 887
Query 840 TCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGCTGTTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGCTGTTT 947
Query 900 CAGCAGATTGATCAGTCTTTTCAGATTCACCGTAGCTATGGAAGCATGCTTGATGGTGAA 959
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 948 CAGCAGATTGATCAGTCTTTCCAGATTCACCGTAGCTATGGAAGCATGCTTGATGGTGAA 1007
Query 960 TCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAATCCCTATCTCTTGGGTGTCACAATG 1019
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1008 TCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAATCCCTATCTGTTGGGCGTCACTATG 1067
Query 1020 TTTGTTTCGATGCTTCATTCTGTATTTGACTTCCTTGCATTCAAAAATGATATCCAGTTT 1079
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1068 TTTGTTTCGATGCTTCATTCTGTATTCGACTTCCTTGCATTCAAAAATGATATCCAGTTT 1127
Query 1080 TGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTTATC 1187
Query 1140 TGTCAGTTTATCATCTTCCTCTACCTGCTTGACAACGACACTTCTTGGATGATACTGGCT 1199
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1188 TGTCAGTTTATCATCTTCCTCTACCTGCTTGACAACGACACTTCATGGATGATACTGGCT 1247
Query 1200 AGCTCCGGAGTTGGTGTCTGCATCGAGTTCTGGAAAATAGGGAAAGCCATGCGGATTGAG 1259
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1248 AGCTCTGGAGTTGGTGTCTGCATCGAGTTCTGGAAAATTGGGAAAGCCATGCGCATTGAG 1307
Query 1260 GTTGATCGAAGTGGGATGATTCCAAGATTGAGGTTCCACGACCGTGAATCCTATGCAAGC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GTTGATCGAAGTGGGATGATTCCAAGATTGAGGTTCCACGACCGTGAATCCTATGCAAGC 1367
Query 1320 AACAAGACCAAGGAGTATGACGACATCGCCATTAAATTCTTATCCTATGTGCTCCTCCTC 1379
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1368 AACAAGACCAAGGAGTATGACGACATTGCCATCAAATTCTTATCCTATGTGCTCCTCCTT 1427
Query 1380 CATGTTGTGGGTTTCTCCATATATTCACTTGCCTATGAACGCCACAAGAGCTGGTACTCA 1439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CTTGTTGTGGGTTTCTCCATATATTCACTTGCCTATGAACGCCACAAGAGCTGGTACTCA 1487
Query 1440 TGGATCCTATCTTCACTAACGAGCTGCGTCTACATGTTTGGTTTCATAATGATGTGTCCT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TGGATCCTATCTTCACTAACGAGCTGCGTCTACATGTTTGGTTTCATAATGATGTGTCCT 1547
Query 1500 CAATTGTTCATCAACTATAAGCTGAAGTCAGTAGCACATTTACCATGGAGGCAAATGACA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CAATTGTTCATCAACTATAAGCTGAAGTCAGTAGCACATTTACCATGGAGGCAAATGACA 1607
Query 1560 TATAAGTTCCTCAACACAATCATCGACGATCTCTTTGCTTTTGTCATCAAAATGCCAATG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TATAAGTTCCTCAACACAATCATCGACGATCTCTTTGCTTTTGTCATCAAAATGCCAATG 1667
Query 1620 CTGCATCGCATTTCTGTCTTCCGAGATGATGTGATATTCTTAATATACTTGTACCAGAGA 1679
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TTGCATCGCCTTTCTGTCTTCCGAGATGATGTGATATTCTTAATATACTTGTACCAGAGA 1727
Query 1680 TGGGTTTATCCTGTGGACAGAACACGTGTCAACGAATTTGGTTTTGGAGGTGAGGATGAG 1739
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1728 TGGGTTTATCCTGTGGACAAAACACGTGTCAACGAGTTTGGTTTTGGAGGTGAGGATGAG 1787
Query 1740 TCTGTGGATACAAAGAAGATCTCTGACCAAGAAGATGACAAGAAAACAAACTAATTAGCT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 TCTGTGGATACAAAGAAGATCTCTGACCAAGAAGATGACAAGAAAACAAACTAATTAGCT 1847
Query 1800 TTGTGCTTTTGTT 1812
|||||||||||||
Sbjct 1848 TTGTGCTTTTGTT 1860
> AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:7946310-7950253 FORWARD LENGTH=2247
Length=2247
Score = 1744 bits (944), Expect = 0.0
Identities = 1458/1706 (85%), Gaps = 35/1706 (2%)
Strand=Plus/Plus
Query 108 ATTACCGGAATCATTAGAATCGCCGTCTTCTGCTACTTTGCTTCTAAGTTCTTTTCTCCG 167
||| |||| ||| |||||||||||||||| || || |||||||||||||||||||||||
Sbjct 347 ATTTCCGGCATCGTTAGAATCGCCGTCTTTTGGTATTTTGCTTCTAAGTTCTTTTCTCCT 406
Query 168 AAACAAAAACC-ATCGGATCCTTCTAAGCCTTCTCATCTTATGTCCAATCTCTTTCAGAG 226
|| || ||||| || |||||| || || ||||| || ||| | |||||||| || |
Sbjct 407 AAGCAGAAACCTAT-GGATCCCACTGCTCCGTCTCAGCTCATGACTAATCTCTTCCACAA 465
Query 227 GGGAGAGCCCA-TGGATATGTGGTTTTATCTTTCGGAGCATGAGAAATTCAATGACTTTG 285
||| || || ||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 466 GGGCGA-ATCATTGGATATGTGGTTTTATCTATCAGAGCAGGAGAAGTTCAATGACTTTG 524
Query 286 GCAATGAAGGTGCGCTTAT-TTGGCACGAGACAAACATACCTTATGCTGTGTGGA-AGCC 343
||||||| |||||| ||| |||||| ||||| || |||||||||||||| |||| | ||
Sbjct 525 GCAATGATCGTGCGC-TATATTGGCATGAGACGAATATACCTTATGCTGTATGGACA-CC 582
Query 344 AGAGAGCACTAGGACCTTGTCAATGACATATTATCCATCCGAGGCACTGA-AGAATAATG 402
|||||| | ||||||| |||| | || ||||||||||| ||| |||| | |||||||||
Sbjct 583 AGAGAGTATTAGGACCAAGTCACTTACGTATTATCCATCTGAGACACT-ACAGAATAATG 641
Query 403 GAAGTCTGTATGCTCATGTCTTCTTTGCTCGATCTGG-TTATCCTATAGATCCTAGTGAT 461
||||||||||||||||| |||| |||||||||||||| || ||| || || || | ||||
Sbjct 642 GAAGTCTGTATGCTCATATCTTTTTTGCTCGATCTGGATT-TCCCATTGACCCCACTGAT 700
Query 462 CCTGAATACCAGCCTCTTAACT-GCTTTGGCAGGACACACCCCATTGCAACTTACTTACC 520
|||||||| || |||||||| | | ||| | ||||| || | | || |||||||| ||
Sbjct 701 CCTGAATATCAACCTCTTAA-TAGTTTTAGTAGGACGCATGCTGTGGCGACTTACTTTCC 759
Query 521 AAAGC-GAAAAGCAGATAAGAAGAAGAGTCTGTTGGGAAATCCCAAAGACGATGATGAAT 579
||||| ||||| | |||||||||||||||| ||||| | |||||||||| ||||||||
Sbjct 760 AAAGCAGAAAA-AAAATAAGAAGAAGAGTCTCTTGGGCAGTCCCAAAGACTCTGATGAAT 818
Query 580 CC-AATGTTGAAGTTGAGGAGGTT-GATGGTAAGGACTCGGATCTCAAGGATGAGGGACC 637
|| || |||||||||| | ||| || | |||| | || |||| |||||| |||| ||
Sbjct 819 CCGAA-CCTGAAGTTGAGAAAGTTGGA-GATAAGAAATCAGATCCCAAGGAAGAGGTCCC 876
Query 638 TGTGGAATGGGT-TTCCTACTGGAAACCAAATGTCACAATTAACCTAGTCGATGACTTTA 696
|||||||||| | | ||| ||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 877 TGTGGAATGGATATCCCT-CTGGAAACCTAATGTCACGATTAACCTGGTTGATGATTTTA 935
Query 697 CTCGCTATCCACAGCATGGTGTACCACCAAACATTGATCCTTACTTACTGGTGGAACCTA 756
||| |||| ||||| ||||||||||||||||||||| |||| |||||||||| ||||| |
Sbjct 936 CTCACTATTCACAGAATGGTGTACCACCAAACATTGCTCCTCACTTACTGGTAGAACCGA 995
Query 757 GTACAGTAAACTACTACCCTACAGTTTTCTTTAATGAGTTTTGGCTGCTAAGGGACAAGT 816
|||| ||| ||||| |||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 996 CCACAGGAAATTACTATCCTACAATTTACTTCAATGAGTTTTGGCTGCTAAGGGACAAGT 1055
Query 817 TGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAA 876
| ||| | |||||||||| |||||||| || ||||| ||||||||| |||| |||||||
Sbjct 1056 TCATTCCAGTCAATGAGACAGTCTCAGAACTACCACTAAATCTGGAAATAAGTCCCATAA 1115
Query 877 GCATGACAAAGTGGCAGCTGTTTCAGCA-GATTGATCAGTCTTTTCAGATTCACCGTAGC 935
|||||| |||||||| ||||||||||| | ||||||| ||||| ||||| || ||||||
Sbjct 1116 GCATGATGAAGTGGCAACTGTTTCAGCAAG-TTGATCAATCTTTCCAGATGCAGCGTAGC 1174
Query 936 TATGGAAGCATGCTTGATGGTGAATCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAAT 995
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1175 TATGGAAGCATGCTTGACGGTGAATCTGACGAACTAAAGAAGGTGTTTTTGGAAGGAAAT 1234
Query 996 CCCTATCTCTTGGGTG-TCACAATGTTTGTTTCGATGCTTCATTCTGTATTTGACTTCCT 1054
|||||||| ||||| | |||| ||||||||||||||||||||||| || || ||||||||
Sbjct 1235 CCCTATCTTTTGGG-GATCACGATGTTTGTTTCGATGCTTCATTCAGTGTTCGACTTCCT 1293
Query 1055 TGCATTCAAAAATGATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGC 1114
|||||||||||||||||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 1294 GGCATTCAAAAATGATATCCAATTCTGGAACAAAAATAAATCTATGGAAGGGCTGTCTGC 1353
Query 1115 GAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAA 1174
|||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1354 AAAGTCTGTTGTACTGAACTTTATCTGTCAGTTTGTCATCTTCCTCTACTTGCTTGACAA 1413
Query 1175 CGACACTTCTTGGATGATACTGGCTAGCTCCGGAGTTGGTGTCTGCATCGAGTTCTGGAA 1234
||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1414 CGACACTTCATGGATGATACTGGCTAGTTCCGGAGTCGGTGTCTGCATTGAGTTCTGGAA 1473
Query 1235 AATAGGGAAAGCCATGCGGATTGAGGTTGATCGAAGTGGGATGATTCCAAGATTGAGGTT 1294
|||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1474 AATAGGGAAAGCCATGCGCATAGAGGTTGATCGAAGTGGAATGATTCCAAGGTTGAGGTT 1533
Query 1295 CCACGACCGTGAATCCTATGCAAGCAACAAGACCAAGGAGTATGACGACATCGCCATTAA 1354
||| || |||||||| ||||||||||| || |||||||||||||| ||||| ||||| ||
Sbjct 1534 CCATGATCGTGAATCGTATGCAAGCAATAAAACCAAGGAGTATGATGACATTGCCATCAA 1593
Query 1355 ATTCTTATCCTATGTGCTCCTCCTCCATGTTGTGGGTTTCTCCATATATTCACTTGCCTA 1414
|||||||||||||||||||||||||| ||| | || || ||||||||||| || || ||
Sbjct 1594 ATTCTTATCCTATGTGCTCCTCCTCCTTGTCATTGGCTTGTCCATATATTCTCTCGCTTA 1653
Query 1415 TGAACGCCACAAGAGCTGGTACTCATGGATCCTATCTTCACTAACGAGCTGCGTCTACAT 1474
||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct 1654 TGAACGCCACAAGAGCTGGTATTCTTGGATACTATCTTCACTAACAAGCTGTGTCTACAT 1713
Query 1475 GTTTGGTTTCATAATGATGTGTCCTCAATTGTTCATCAACTATAAGCTGAAGTCAGTAGC 1534
||| |||||||| |||||||||||||| | ||||||||||| ||||| || ||||| ||
Sbjct 1714 GTTCGGTTTCATCATGATGTGTCCTCAGCTATTCATCAACTACAAGCTTAAATCAGTGGC 1773
Query 1535 ACATTTACCATGGAGGCAAATGACATATAAGTTCCTCAACACAATCATCGACGATCTCTT 1594
||||||||||||||| || ||||| || |||||||||||||| || ||||||||||||||
Sbjct 1774 ACATTTACCATGGAGACAGATGACTTACAAGTTCCTCAACACCATTATCGACGATCTCTT 1833
Query 1595 TGCTTTTGTCATCAAAATGCCAATGCTGCATCG-CATTTCTGTCTTCCGAGATGATGTGA 1653
||| ||||||||||||||||| || | ||||| | ||||||| ||| ||||||||||||
Sbjct 1834 TGCCTTTGTCATCAAAATGCCGATTTTACATCGAC-TTTCTGTATTCAGAGATGATGTGA 1892
Query 1654 TATTCTTAATATACTTGTACCAGAGATGGGTTTATCCTGTGGACA-GAACACGTGTCAAC 1712
||||||| |||||||| ||||| || |||||||| || ||||| | || ||||||| |||
Sbjct 1893 TATTCTTGATATACTTATACCAAAGGTGGGTTTACCCAGTGGATAAGA-CACGTGTGAAC 1951
Query 1713 GAATTTGGTTTTGGAGGTGAGGATGAGTCTGTGGATACA-AAGAAGATCTCTGACCAAGA 1771
|| || |||||||||||||||||||| ||| || | | ||| |||| |||| ||||
Sbjct 1952 GAGTTCGGTTTTGGAGGTGAGGATGAAACTGCAGAGA-AGAAGTTGATCACTGAGAAAGA 2010
Query 1772 AGATGA---CAAGAAAACAAACTAAT 1794
||| || |||||||||||||||||
Sbjct 2011 AGAAGAAGACAAGAAAACAAACTAAT 2036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89708373915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5