BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940340
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein |... 610 2e-173
AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein |... 411 2e-113
> AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:2748193-2751771 FORWARD LENGTH=2022
Length=2022
Score = 610 bits (330), Expect = 2e-173
Identities = 332/333 (99%), Gaps = 0/333 (0%)
Strand=Plus/Plus
Query 1600 GTTTCATAATGATGTGTCCTCAATTGTTCATCAACTATAAGCTGAAGTCAGTAGCACATT 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 GTTTCATAATGATGTGTCCTCAATTGTTCATCAACTATAAGCTGAAGTCAGTAGCACATT 1587
Query 1660 TACCATGGAGGCAAATGACATATAAGTTCCTCAACACAATCATCGACGATCTCTTTGCTT 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 TACCATGGAGGCAAATGACATATAAGTTCCTCAACACAATCATCGACGATCTCTTTGCTT 1647
Query 1720 TTGTCATCAAAATGCCAATGCTGCATCGCCTTTCTGTCTTCCGAGATGATGTGATATTCT 1779
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1648 TTGTCATCAAAATGCCAATGTTGCATCGCCTTTCTGTCTTCCGAGATGATGTGATATTCT 1707
Query 1780 TAATATACTTGTACCAGAGATGGGTTTATCCTGTGGACAAAACACGTGTCAACGAGTTTG 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 TAATATACTTGTACCAGAGATGGGTTTATCCTGTGGACAAAACACGTGTCAACGAGTTTG 1767
Query 1840 GTTTTGGAGGTGAGGATGAGTCTGTGGATACAAAGAAGATCTCTGACCAAGAAGATGACA 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GTTTTGGAGGTGAGGATGAGTCTGTGGATACAAAGAAGATCTCTGACCAAGAAGATGACA 1827
Query 1900 AGAAAACAAACTAATTAGCTTTGTGCTTTTGTT 1932
|||||||||||||||||||||||||||||||||
Sbjct 1828 AGAAAACAAACTAATTAGCTTTGTGCTTTTGTT 1860
Score = 599 bits (324), Expect = 3e-170
Identities = 436/483 (90%), Gaps = 35/483 (7%)
Strand=Plus/Plus
Query 1018 GGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAA 915
Query 1078 GCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGCAGATTGATCAGTCTTTCCAGATTC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGCAGATTGATCAGTCTTTCCAGATTC 975
Query 1138 ACCGTAGCTATGGAAGCATGCTTGATGGTGAATCTGACGAACT-AA-AGGGTGTTTTTGG 1195
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 976 ACCGTAGCTATGGAAGCATGCTTGATGGTGAATCTGACGAACTAAAGAGGGTGTTTTTGG 1035
Query 1196 AAGGAAATCCCTATCTGTTGGGCGTCACAATGTTGTTTCGATGCTTCATTCTGTATTTGA 1255
|||||||||||||||||||||||||||| | || || || | ||| | | ||
Sbjct 1036 AAGGAAATCCCTATCTGTTGGGCGTCAC--T-ATG-TT---TG--T--TTC-G-A--TG- 1079
Query 1256 CTTCCTTGCATTCAAAAATGCTATT-GAATTACCCGTGACATTCCCTGCA-GATATCCAG 1313
||| ||||| || |||| || || || || |||| | | |||||||||
Sbjct 1080 ----CTT-CATTC-----TG-TATTCGACTT--CCTTG-CATT-CAAAAATGATATCCAG 1124
Query 1314 TTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTGAATTTT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1125 TTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTAAACTTT 1184
Query 1374 ATCTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAACGACACTTCGTGGATGATACTG 1433
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1185 ATCTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAACGACACTTCATGGATGATACTG 1244
Query 1434 GCTAGCTCTGGAGTTGGTGTCTGCATCGAGTTCTGGAAAATAGGGAAAGCCATGCGGATT 1493
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1245 GCTAGCTCTGGAGTTGGTGTCTGCATCGAGTTCTGGAAAATTGGGAAAGCCATGCGCATT 1304
Query 1494 GAG 1496
|||
Sbjct 1305 GAG 1307
Score = 326 bits (176), Expect = 6e-88
Identities = 195/204 (96%), Gaps = 1/204 (0%)
Strand=Plus/Plus
Query 816 TCAGCC-GTTGCAACTTACTTGCCAAAGCGAAAAGCAGATAAGAAGAAGAGTTTGTTGGG 874
||| || |||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 545 TCACCCTGTTGCAACTTACTTACCAAAGCGAAAAGCAGATAAGAAGAAGAGTCTGTTGGG 604
Query 875 AAATCCCAAAGACTCTGATGAATCCAAAGTTGAAGTTGAGGAGGTTGATGGTAAGGACTC 934
||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 605 AAATCCCAAAGACTCTGATGAATCCCATGTGGAAGTTGAGGAGGTTGATGGTAAGGACTC 664
Query 935 GGATCTCAAGGATGAGGGCCATGTGGAATGGGTATCCTACTGGAAACCAAATGTCACAAA 994
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 665 GGATCTCAAGGATGAGGGCCCTGTGGAATGGGTATCCTACTGGAAACCAAATGTCACAAT 724
Query 995 TAACCTAGTCGATGACTTTACTCG 1018
||||||||||||||||||||||||
Sbjct 725 TAACCTAGTCGATGACTTTACTCG 748
Score = 174 bits (94), Expect = 2e-42
Identities = 102/106 (96%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 1495 AGACCAAGGAGTATGACGACATCGCCATTAAATTCTTATCCTATGCGCTCCTCCTCCTTG 1554
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||
Sbjct 1372 AGACCAAGGAGTATGACGACATTGCCATCAAATTCTTATCCTATGTGCTCCTCCTTCTTG 1431
Query 1555 TTGTGGGTTTCTCCATATATTCACTTGCCTATGAACGCCACAAGAG 1600
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 TTGTGGGTTTCTCCATATATTCACTTGCCTATGAACGCCACAAGAG 1477
Score = 82.4 bits (44), Expect = 2e-14
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 742 CTGTGGAATGGGTATCAAACTGGAAACCAAATGTCACAATTAACCTAGTC 791
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 685 CTGTGGAATGGGTATCCTACTGGAAACCAAATGTCACAATTAACCTAGTC 734
> AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:7946310-7950253 FORWARD LENGTH=2247
Length=2247
Score = 411 bits (222), Expect = 2e-113
Identities = 403/484 (83%), Gaps = 37/484 (8%)
Strand=Plus/Plus
Query 1018 GGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAA 1077
|||||||||| ||| | |||||||||| |||||||| || ||||| ||||||||| |||
Sbjct 1047 GGGACAAGTTCATTCCAGTCAATGAGACAGTCTCAGAACTACCACTAAATCTGGAAATAA 1106
Query 1078 GCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGC-AGATTGATCAGTCTTTCCAGATT 1136
| ||||||||||||| |||||||| |||||||||| || ||||||| |||||||||||
Sbjct 1107 GTCCCATAAGCATGATGAAGTGGCAACTGTTTCAGCAAG-TTGATCAATCTTTCCAGATG 1165
Query 1137 CACCGTAGCTATGGAAGCATGCTTGATGGTGAATCTGACGAACTAAAG--GGTGTTTTTG 1194
|| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1166 CAGCGTAGCTATGGAAGCATGCTTGACGGTGAATCTGACGAACTAAAGAAGGTGTTTTTG 1225
Query 1195 GAAGGAAATCCCTATCTGTTGGGCG-TCACAATGTTGTTTCGATGCTTCATTCTGTATTT 1253
||||||||||||||||| ||||| | |||| | || || || | ||| | | |
Sbjct 1226 GAAGGAAATCCCTATCTTTTGGG-GATCAC---GATG-TT---TG--T--TTC-G-A--T 1269
Query 1254 GACTTCCTTGCATTCAAAAATGCTATTGAATTACCCGTGACATTCCCTGCA-GATATCCA 1312
| ||| ||||| | || | | || || || || |||| | | ||||||||
Sbjct 1270 G-----CTT-CATTC---AGTG-T-TCGACTT--CC-TGGCATT-CAAAAATGATATCCA 1314
Query 1313 GTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTGAATTT 1372
|| |||||||| || |||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 1315 ATTCTGGAACAAAAATAAATCTATGGAAGGGCTGTCTGCAAAGTCTGTTGTACTGAACTT 1374
Query 1373 TATCTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAACGACACTTCGTGGATGATACT 1432
||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1375 TATCTGTCAGTTTGTCATCTTCCTCTACTTGCTTGACAACGACACTTCATGGATGATACT 1434
Query 1433 GGCTAGCTCTGGAGTTGGTGTCTGCATCGAGTTCTGGAAAATAGGGAAAGCCATGCGGAT 1492
|||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1435 GGCTAGTTCCGGAGTCGGTGTCTGCATTGAGTTCTGGAAAATAGGGAAAGCCATGCGCAT 1494
Query 1493 TGAG 1496
|||
Sbjct 1495 AGAG 1498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95732439315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5