BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940349
Length=391
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08565.1 | Symbols: | Transcription initiation Spt4-like pr... 593 3e-169
AT5G63670.1 | Symbols: SPT42 | SPT4 homolog 2 | chr5:25487981-2... 377 3e-104
> AT5G08565.1 | Symbols: | Transcription initiation Spt4-like
protein | chr5:2775898-2777400 FORWARD LENGTH=663
Length=663
Score = 593 bits (321), Expect = 3e-169
Identities = 356/373 (95%), Gaps = 2/373 (1%)
Strand=Plus/Plus
Query 1 GATTTTGGAGACAAATCACAATGGGAGAAGCGCCTGCCCAGATTCCGACGAGTTTCGGCC 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 GATTTTGAAGACAAATCACAATGGGAGAAGCGCCTGCCCAGATTCCGACGAGTTTCGGCC 106
Query 61 ACGAGCTCAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGTTTAGGGACT 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 107 ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGTTTAGGGATT 166
Query 121 CTGGTTGCGAGAATTGTCCTTTCTTCAAAATGGAAGACGATCATGAACGTATCGTCGATG 180
|||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 167 CTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGATCATGAACGCATCGTCGATG 226
Query 181 TTACAAC-CCCTAATTTCAATGGTATAATATCTATGATGGATCCACGCAGAAGTTGGGCA 239
||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 227 TTACAACTCCC-AACTTCAATGGTATAATCTCTATGATGGATCCACGCAGAAGTTGGGCA 285
Query 240 GCAAGATGGTTAAGAATAGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAG 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GCAAGATGGTTAAGAATTGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAG 345
Query 300 GCACTCCCAGAAGAAATGCAGTCCATATGCCAACAAGTACGGGTGCAGTACGTTCCGCCC 359
||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 346 GCACTCCCAGAGGAAATGCAGTTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCC 405
Query 360 AAACGCATTTGAA 372
||||| |||||||
Sbjct 406 AAACGTATTTGAA 418
> AT5G63670.1 | Symbols: SPT42 | SPT4 homolog 2 | chr5:25487981-25489428
FORWARD LENGTH=563
Length=563
Score = 377 bits (204), Expect = 3e-104
Identities = 303/351 (86%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 27 GAAGCG--CCTGCCCAGATTCCGACGAGTTTCGGCCACGAGCTCAGGGCTTGTCTTCGAT 84
|||||| || || ||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct 36 GAAGCGCACCAGCTCAGATTCCGACTAGCTTCGGCCATGAGCTTAGGGCTTGTCTTCGTT 95
Query 85 GCCGCCTCGTCAAGACCTACGATCAGTTTAGGGACTCTGGTTGCGAGAATTGTCCTTTCT 144
|||| |||||||||||||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 96 GCCGACTCGTCAAGACCTATGACCAGTTTAGAGACGCTGGTTGCGAGAATTGTCCTTTCT 155
Query 145 TCAAAATGGAAGACGATCATGAACGTATCGTCGATGTTACAACCCCTAATTTCAATGGTA 204
|||| |||||||| |||||||| |||||||| || || || |||||||||||||||||||
Sbjct 156 TCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTCACTACCCCTAATTTCAATGGTA 215
Query 205 TAATATCTATGATGGATCCACGCAGAAGTTGGGCAGCAAGATGGTTAAGAATAGGGAAGT 264
|||| ||| ||||||||||| | ||||| ||||| || || ||||||||||| |||||||
Sbjct 216 TAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCGGCTAGGTGGTTAAGAATCGGGAAGT 275
Query 265 TTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAGGCACTCCCAGAAGAAATGCAGTC-C 323
||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||| | |
Sbjct 276 TTGCTCCTGGTTGCTACACACTTGCTGTCTCAGAGCCACTCCCTGAGGAAATGCAG-CAC 334
Query 324 ATATGCCAACAAGTA-CGGGTGCAGTACGTTCCGCCCAAACGCATTTGAAG 373
|||||||| | | | || || || || |||| ||| |||||||| |||||
Sbjct 335 TTATGCCAAGAGG-AGCGTGTACAATATGTTCTGCCGAAACGCATGTGAAG 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18448263883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5